BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919343
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06280.1 | Symbols: LBD2 | LOB domain-containing protein 2 |... 920 0.0
> AT1G06280.1 | Symbols: LBD2 | LOB domain-containing protein 2
| chr1:1920307-1920949 REVERSE LENGTH=643
Length=643
Score = 920 bits (498), Expect = 0.0
Identities = 587/629 (93%), Gaps = 9/629 (1%)
Strand=Plus/Plus
Query 23 ATGATGCAAAGGAACTCTAACAACACCACCACCACCACAAACATCTCCAATAACTCATCG 82
|||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 3 ATGATGCAAAGGAACTCTAACAACACCAGCATCACCAGTAACATCTCCAATAACTCATCG 62
Query 83 TCGCATCAAGCTTGTGCATCATGTAAACATCAAAGGAAGAAATGTAACAATGAATGTATC 142
||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 63 TCGCATCAAGCTTGTGCTTCATGCAAACATCAAAGGAAGAAATGCAACAACGAATGTATC 122
Query 143 CTATCGCCGTATTTCCCAGCCCGCAAGACCAAAGAGTTTCAGGCCGTGCACAAGGTCTTC 202
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 123 TTATCGCCGTATTTCCCAGCCCGCAAGACTAAAGAGTTTCAGGCCGTGCACAAGGTCTTC 182
Query 203 GGTGTCAGTAACGTACAAAAAATGGTACGGACCGTACGTGAAGAGGACCGTACCAAGCTC 262
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 183 GGTGTCAGTAACGTACAAAAAATGGTACGGACGGTACGTGAAGAGGACCGTACCAAGCTC 242
Query 263 TCTGATTCTTTGACATGGGAAGCTCTCTGGAGACAGAAAGATCCGGTCCTTGGCTCCTAT 322
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 243 TCTGATTCTTTAACATGGGAAGCTCTATGGAGACAGAAAGATCCGGTCCTTGGCTCCTAT 302
Query 323 GGAGAGTATAGGAGGATTTGTGAAGAGCTCAAGTTATACAAAAGCTTGGTTCATAACCAA 382
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 GGAGAGTATAGGAGGATTTGTGAAGAGCTCAAGTTATACAAAAGCTTGGTTCATAACCAG 362
Query 383 CCTCTTATCGGTAATTGGGATAATAATCAACGAGTGTTCAGCAATAATAGTAACAACAAG 442
||||| || ||| | |||||||||||||||| || || | |||||||||||||||||||
Sbjct 363 CCTCTCATTGGT--T-GGGATAATAATCAACGCGTATTTAACAATAATAGTAACAACAAG 419
Query 443 AACGGGTTAGCTATGA--A-TTCGAGTGGCTCGGGAGGGTTAAGTGTTAACAACAACGGT 499
||||| ||||| |||| | ||||||||| || |||||||| |||||||||||||| |||
Sbjct 420 AACGGATTAGCGATGACGAATTCGAGTGGATCAGGAGGGTTTAGTGTTAACAACAATGGT 479
Query 500 GTTGGTGTGAATCGGGAGATTGTCAACGTTGGATATACATCAAGGAATGTGCAAGGTGGC 559
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 480 GTTGGTGTGAATCGGGAGATTGTCAACGGTGGATATGCATCAAGGAATGTGCAAGGTGGT 539
Query 560 TGGGAAAATTTGAAGCAAGATCAAAGGCAACAATGTTATGCAGTGATTAAT---GGTTTC 616
||||||||| | ||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 540 TGGGAAAATCTAAAGCACGATCAAAGGCAACAATGTTATGCAGTGATTAATAATGGTTTC 599
Query 617 AAACAACACTATGTCCCACTCTAAGTAAC 645
|||||||||||| ||||||||||||||||
Sbjct 600 AAACAACACTATCTCCCACTCTAAGTAAC 628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31898683345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5