BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919349

Length=467
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G06340.1 | Symbols:  | Plant Tudor-like protein | chr1:19332...   595    1e-169


> AT1G06340.1 | Symbols:  | Plant Tudor-like protein | chr1:1933284-1934014 
REVERSE LENGTH=731
Length=731

 Score =  595 bits (322),  Expect = 1e-169
 Identities = 389/422 (92%), Gaps = 1/422 (0%)
 Strand=Plus/Plus

Query  1    GTTTG-ATCATACTTAAATCCTTAACAATGGAGTTCGTGAAAGGAGATCAAGTTGAAGTC  59
            ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GTTTGAATCATACTAAAATCCTTAACAATGGAGTTCGTGAAAGGAGATCAAGTTGAAGTC  60

Query  60   TGCAGCAAAGAAGACGGCTTCTTGGGGTCTTACTTCGGTGCCACGGTACTGTCGAAGACT  119
            ||||||||||||||||| ||||| |||||||||||||||||||||||  | || ||||||
Sbjct  61   TGCAGCAAAGAAGACGGTTTCTTAGGGTCTTACTTCGGTGCCACGGTTGTATCAAAGACT  120

Query  120  CCGGAGGGATCATACTACAAGGTTAAGTACAAGAATCTTGTGTCGGAGAAGGATCAATCT  179
            || |||||||| ||||||||| ||||||||||||||||||||||||| | ||||||||||
Sbjct  121  CCCGAGGGATCTTACTACAAGATTAAGTACAAGAATCTTGTGTCGGACACGGATCAATCT  180

Query  180  AAACCGTTAATCGAAGTCATCTCAGCCGACGAACTCCGTCCGATGCCTCCCAAATCTCTC  239
            |||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  181  AAACGGTTAGTCGAAGTCATCTCAGCCGACGAACTACGTCCGATGCCTCCCAAATCTCTC  240

Query  240  CCCGTAATGTTTCGCTGCCAAGACAAGGTCGATGCTTTAGACAAAGACGGGTGGTGGGTC  299
            | |||| || ||||||||  ||| |||||||||||||| |||||||||||||||||||||
Sbjct  241  CACGTATTGATTCGCTGCGGAGATAAGGTCGATGCTTTCGACAAAGACGGGTGGTGGGTC  300

Query  300  GGAGAGGTCACCGCTGTGAGAGGCAACATGTACTCTGTTTACTTTTTGACGACCGGCGAG  359
            ||||||||||||||||||||| | ||||| |||||||||||||||| |||||||| ||||
Sbjct  301  GGAGAGGTCACCGCTGTGAGAAGAAACATCTACTCTGTTTACTTTTCGACGACCGACGAG  360

Query  360  GAGCTCCAGTACCCGCTTTACTCTCTGAGAAGGCATCTCGAATGGGTTAACGGAGACTGG  419
            |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||  ||||
Sbjct  361  GAGCTCGAGTACCCGCTTTACTCTCTGAGAAAGCATCACGAATGGGTTAACGGATCCTGG  420

Query  420  GT  421
            ||
Sbjct  421  GT  422



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22203492974


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5