BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg919352 Length=287 Score E Sequences producing significant alignments: (Bits) Value AT1G06370.1 | Symbols: | pseudogene, similar to putative glyco... 296 7e-80 > AT1G06370.1 | Symbols: | pseudogene, similar to putative glycolipid alpha-mannosyltransferase, blastp match of 41% identity and 9.6e-10 P-value to GP|13161358|dbj|BAB32949.1||AP002908 putative glycolipid alpha-mannosyltransferase {Oryza sativa (japonica cultivar-group)} | chr1:1942843-1944934 REVERSE LENGTH=1401 Length=1401 Score = 296 bits (160), Expect = 7e-80 Identities = 234/268 (87%), Gaps = 11/268 (4%) Strand=Plus/Plus Query 29 GAGAGTAGTGCGCATTCTCTTTCTCATGCCAAGCCATTCTACTCC------TTATTATTC 82 ||||||| | ||||||||| |||||||||||||||||| ||||| ||||||||| Sbjct 1022 GAGAGTAAAGAGCATTCTCTCTCTCATGCCAAGCCATTCGACTCCTTATTATTATTATTC 1081 Query 83 CACTCTCCATAGTAACATCCCAATGCAATTTCTCGACTACATGCCAAGTGAAGATA-AAG 141 |||||||||||||||||| ||||||| |||||||||||||| ||||| ||||| | || Sbjct 1082 CACTCTCCATAGTAACATTCCAATGCGATTTCTCGACTACACACCAAGCGAAGACATTAG 1141 Query 142 GAGAATTTGATGAGTCAGACCAATTCTTAATGGACCTTATAGGATTTGCATCAAAGTTAG 201 |||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 1142 GAGATTTTGATGAGTCAGACCAATTCTTAATGGACCTTTTAGGATTGGCATCAAAGTTAG 1201 Query 202 CTAGAAACTGGTCAGCACTG-CCTAGTCACAT-TGTATTGTTTGCATCAGAAGCAACAAA 259 ||||||| ||| |||||| | || ||||||| | ||||||||||||| ||||||||||| Sbjct 1202 CTAGAAATTGGCCAGCAC-GACCGCGTCACATAT-TATTGTTTGCATCGGAAGCAACAAA 1259 Query 260 ACTCTGAGATTTTATGATCCAATATTCC 287 |||| ||| |||||||||||| |||||| Sbjct 1260 ACTCAGAGGTTTTATGATCCACTATTCC 1287 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13220417987 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5