BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919352

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G06370.1 | Symbols:  | pseudogene, similar to putative glyco...   296    7e-80


> AT1G06370.1 | Symbols:  | pseudogene, similar to putative glycolipid 
alpha-mannosyltransferase, blastp match of 41% identity 
and 9.6e-10 P-value to GP|13161358|dbj|BAB32949.1||AP002908 
putative glycolipid alpha-mannosyltransferase {Oryza sativa 
(japonica cultivar-group)} | chr1:1942843-1944934 REVERSE 
LENGTH=1401
Length=1401

 Score =  296 bits (160),  Expect = 7e-80
 Identities = 234/268 (87%), Gaps = 11/268 (4%)
 Strand=Plus/Plus

Query  29    GAGAGTAGTGCGCATTCTCTTTCTCATGCCAAGCCATTCTACTCC------TTATTATTC  82
             |||||||  | ||||||||| |||||||||||||||||| |||||      |||||||||
Sbjct  1022  GAGAGTAAAGAGCATTCTCTCTCTCATGCCAAGCCATTCGACTCCTTATTATTATTATTC  1081

Query  83    CACTCTCCATAGTAACATCCCAATGCAATTTCTCGACTACATGCCAAGTGAAGATA-AAG  141
             |||||||||||||||||| ||||||| ||||||||||||||  ||||| ||||| |  ||
Sbjct  1082  CACTCTCCATAGTAACATTCCAATGCGATTTCTCGACTACACACCAAGCGAAGACATTAG  1141

Query  142   GAGAATTTGATGAGTCAGACCAATTCTTAATGGACCTTATAGGATTTGCATCAAAGTTAG  201
             |||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct  1142  GAGATTTTGATGAGTCAGACCAATTCTTAATGGACCTTTTAGGATTGGCATCAAAGTTAG  1201

Query  202   CTAGAAACTGGTCAGCACTG-CCTAGTCACAT-TGTATTGTTTGCATCAGAAGCAACAAA  259
             ||||||| ||| |||||| | ||  ||||||| | ||||||||||||| |||||||||||
Sbjct  1202  CTAGAAATTGGCCAGCAC-GACCGCGTCACATAT-TATTGTTTGCATCGGAAGCAACAAA  1259

Query  260   ACTCTGAGATTTTATGATCCAATATTCC  287
             |||| ||| |||||||||||| ||||||
Sbjct  1260  ACTCAGAGGTTTTATGATCCACTATTCC  1287



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13220417987


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5