BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919353
Length=784
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06380.1 | Symbols: | Ribosomal protein L1p/L10e family | c... 1090 0.0
> AT1G06380.1 | Symbols: | Ribosomal protein L1p/L10e family |
chr1:1945124-1946076 FORWARD LENGTH=953
Length=953
Score = 1090 bits (590), Expect = 0.0
Identities = 718/776 (93%), Gaps = 23/776 (3%)
Strand=Plus/Plus
Query 26 TACAACTACGGCTGCTCTTCCGCAGCGACACCAGTCGAAGGTTGACCCGAAGAACGTTAA 85
||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 12 TACTACTACGGCTGCACTTCCGCAGCGACACCAGTCGAAGGTTGACCCGCAGAACGTTAA 71
Query 86 CAGAGCCGTGAAGTCTCTGCTTAAATGGTGGGACTCCAAAT------CC---AA----G- 131
||||||||||||||||||||| ||||||||||||||||||| || || |
Sbjct 72 CAGAGCCGTGAAGTCTCTGCTAAAATGGTGGGACTCCAAATCCAAGACCGAGAACTCTGA 131
Query 132 ---AC-CGAGAACGACGGTTTCGTCTATCTAACCGTGACACTGAAGAGAATCCCCCAGTT 187
|| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 132 ATCACTCGAGAACGACGGTTTCGTCTATCTAATCGTGACACTGAAGAGAATCCCTCAGTT 191
Query 188 GGATCGGACTAACCCTTTGATGATTCCTCTTCCTCATCCTCTCATCGATCTGGCCGCCGA 247
|||||| |||||||| |||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 192 GGATCGTACTAACCCCTTGATGATCCCTCTTCCTCATCCTCTCATCGATCTGGTCGCCGA 251
Query 248 AGATTCACCGGAGCTCTGTTTGATTATCGACGACAAACACAAGAACAAAATCACAAAGGA 307
|||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 252 AGATCCGCCGGAGCTCTGTTTGATCATCGACGACAAACACAAGAACAAAATCACAAAGGA 311
Query 308 AGCGGCTTTGAAGAAGATCGAAGCAGAGAACATTCCAATCACCACAGTGATTAAGGTCTC 367
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 312 AGCGGCTTTGAAGAAGATCGAAGCAGAGAAGATTCCAATCACCACAGTTATTAAAGTCTC 371
Query 368 CAAATTGAAATCCGATTTACGCAAATTAGAGGAGGAGGAGAAGCGATTCGAGTTGTATTT 427
||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 372 CAAATTGAAATCCGATTTACGCAAATTAGAGGAGGAG-A-A-GCGATTCGAGTTGTATTT 428
Query 428 CGCGGAGAGGAGGTTGATGCCGATTTTGCCGAAGCTATTGGGGAAAGATTTTGTTAAGAA 487
||||||||||||| | |||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 429 CGCGGAGAGGAGGCTAATGCCGATGTTGCCGAAGCTGTTGGGGAAAGAGTTTGTTAAGAA 488
Query 488 GAAGAAGAATCCGATTGCGATTAACTTAAGGCACGGT-GATTGGAAAGAGCAGATCGAAA 546
||| |||| |||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 489 GAATAAGACTCCGATTGCGATTAACTTAAGGCATGGTAG-TTGGAAAGAGCAGATCGAAA 547
Query 547 AAGCTTGTGAATCGGCTTTGTTCTTCGTTGGTACAGGTACTTGCAGTGTTGTTAAAGTAG 606
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 AAGCTTGTGAATCAGCTTTGTTCTTCGTTGGTACAGGTACTTGCAGTGTTGTTAAAGTAG 607
Query 607 CGAAATTGTCAATGGGAAGGAAGGAGATTGCAGAGAATGTTGTAGCGGCCATGAATGGGA 666
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 608 CGAAGTTGTCAATGGGAAGGAACGAGATTGCAGAGAATGTTGTAGCGGCCATGAATGGGA 667
Query 667 TTGGTGAATCAGTTCCTGGTAAATGGAAGAATGTTAAATTGTTTCATCTCAAGTTGCTTG 726
||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 668 TTGGTGATTTAGTTCCTGGTAGATGGAAGAATGTTAAATTGTTTCATCTCAAGTTACTTG 727
Query 727 AGAGCATGGCATTGCCTGTTTATCAATCAGTTGCTTGATCAAAATGTTTAAAGAAG 782
||||| ||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 728 AGAGCTTGGCATTGCCTGTTTATCAATCAGTTGCTTGATGAATTTGTTTAAAGAAG 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38127717573
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5