BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919355
Length=700
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06400.1 | Symbols: ARA2, ATRABA1A, ATRAB11E, ARA-2 | Ras-re... 1072 0.0
AT3G15060.1 | Symbols: AtRABA1g, RABA1g | RAB GTPase homolog A1... 276 2e-73
> AT1G06400.1 | Symbols: ARA2, ATRABA1A, ATRAB11E, ARA-2 | Ras-related
small GTP-binding family protein | chr1:1950844-1952785
REVERSE LENGTH=995
Length=995
Score = 1072 bits (580), Expect = 0.0
Identities = 661/701 (94%), Gaps = 2/701 (0%)
Strand=Plus/Plus
Query 2 AAAATTGGATCTCTC-TGTGATGGCTAGTTACAGAGCCGATGAAGAGTACGATTACCTCT 60
|||||| |||||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct 80 AAAATTCGATCTCTCATCTGATGGCTGGTTACAGAGCCGATGAAGAGTACGATTACCTCT 139
Query 61 TCAAGCTGGTGTTGATCGGCGACTCTGGTGTCGGCAAATCGAATCTGCTGTCTAGGTTCA 120
||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 140 TCAAGCTCGTGTTGATCGGCGACTCTGGTGTCGGCAAATCGAATCTGCTCTCTCGGTTCA 199
Query 121 CCAAGAACGAGTTCAATCTCGAATCCAAGTCTACGATTGGTGTTGAGTTCGCTACCAAAA 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 200 CCAAGAACGAGTTCAATCTCGAATCCAAGTCTACTATTGGTGTTGAGTTCGCTACCAAAA 259
Query 181 CTACTAAAGTCGAAGGCAAAGTCGTCAAAGCCCAGATTTGGGATACTGCTGGTCAAGAGA 240
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 260 CCACTAAAGTCGAAGGCAAAGTCGTCAAAGCTCAGATTTGGGATACTGCTGGTCAAGAGA 319
Query 241 GATACCGAGCAATCACAAGCGCTTACTACAGAGGAGCCGTAGGTGCTTTGCTTATTTATG 300
||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |
Sbjct 320 GATACCGAGCAATCACAAGCGCTTATTACAGAGGAGCTGTTGGTGCTTTGCTTATTTACG 379
Query 301 ACGTAACAAGGCACGCGACATTTGAGAATGCCGCAAGATGGTTAAGGGAACTAAGAGGAC 360
|||| ||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 380 ACGTGACAAGGCACGCAACATTTGAGAATGCAGCAAGATGGCTAAGGGAACTAAGAGGAC 439
Query 361 ACACAGACCCAAACATAGTGGTGATGCTTATAGGGAACAAGAGCGATTTGCGCCACTTAG 420
||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||| |
Sbjct 440 ACACAGACCCAAACATAGTGGTGATGCTTATAGGGAACAAGTGCGATCTGCGTCACTTGG 499
Query 421 TGGCAGTCAAAACAGAAGAGGCTAAAGCCTTTGCTGAGAGAGAATCTCTTTATTTCATGG 480
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 500 TGGCAGTCAAAACAGAAGAGGCTAAAGCCTTTGCTGAGAGAGAATCCCTCTATTTCATGG 559
Query 481 AGACATCAGCTCTTGACGCAACCAATGTTGAAAGCGCATTCACAGAAGTACTCTCTCAGA 540
|||| |||||||| ||||||||||||||||||| ||||||||| ||||| ||| ||||||
Sbjct 560 AGACTTCAGCTCTAGACGCAACCAATGTTGAAAACGCATTCACGGAAGTGCTCACTCAGA 619
Query 541 TCCACAAGGTAGTGAGCAAAAGAAGTGTGGATGGAGGTGGAGATTCGACAGAATTACCAG 600
|||||||| ||||||||||||||||||| |||||||| ||||| ||| | || ||||| |
Sbjct 620 TCCACAAGATAGTGAGCAAAAGAAGTGTTGATGGAGGAGGAGAGTCGGCTGATTTACCGG 679
Query 601 GAAAAGGAGAGACGATAAACGTTAAAGAAGACGGATCGGTTCTTAAGAGAATGGGTTGCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 GAAAAGGAGAGACGATAAACGTTAAAGAAGACGGATCGGTTCTTAAGAGAATGGGTTGCT 739
Query 661 GCTCTAACTAGAGTGGGGG-ATTGTAGATTTGGTTTGATTT 700
||||||||||||||||||| ||||||||||||| |||||||
Sbjct 740 GCTCTAACTAGAGTGGGGGGATTGTAGATTTGGCTTGATTT 780
> AT3G15060.1 | Symbols: AtRABA1g, RABA1g | RAB GTPase homolog
A1G | chr3:5069166-5070200 FORWARD LENGTH=902
Length=902
Score = 276 bits (149), Expect = 2e-73
Identities = 398/517 (77%), Gaps = 22/517 (4%)
Strand=Plus/Plus
Query 33 AGAGCCGATGAAGAGTACGATTACCTCTTCAAGCTGGTGTTGATCGGCGACTCTGGTGTC 92
||||| || || || ||||||| ||||| |||| |||| || ||||| || || || |||
Sbjct 86 AGAGCTGACGATGATTACGATTTCCTCTACAAGGTGGTATTAATCGGTGATTCCGGCGTC 145
Query 93 GGCAAATCGAATCTGCTGTCTAGGTTCACCAAG-AACGAGTTCAATCTCGAATCCAAGTC 151
|| ||||| |||||||| ||| | |||| | | |||||||||| ||||| || || ||
Sbjct 146 GGTAAATCCAATCTGCTTTCTCGATTCA-CGCGCAACGAGTTCAGCCTCGAGTCTAAATC 204
Query 152 TACGATTGGTGTTGAGTTCGCTA-CCAAAACTACTAAAGTCGAAGGCAAAGTCGTCAAAG 210
|| || ||||| || ||||| | || || | | | | ||||| | ||| ||||||| |
Sbjct 205 CACCATCGGTGTCGAATTCGCCACCCGAAGC-ATTCATGTCGATGAAAAAATCGTCAAGG 263
Query 211 CCCAGATTTGGGATACTGCTGGTCAAGAGAGATACCGAGCAATCACAAGCGCTTACTA-C 269
| ||||||||||| || || || ||||||||||||||||||||||||||||| ||||| |
Sbjct 264 CTCAGATTTGGGACACCGCCGGCCAAGAGAGATACCGAGCAATCACAAGCGCATACTATC 323
Query 270 AGAGGAGCCGTAGGTGCTTTGCTTATTTATGACGTAACAAGGCACGCGACATTTGAGAAT 329
||||||| || || ||||||||| ||||||| || ||| |||| | ||||||||||||
Sbjct 324 -GAGGAGCTGTTGGGGCTTTGCTTGTTTATGATGTTACACGGCATGTGACATTTGAGAAC 382
Query 330 GCCGCA-AGATGGTT-AAGGGAACTAAGAGGAC-ACACAGAC-CCAAACATAGTGGTGAT 385
| | | |||||||| |||| | || |||| || ||||||| |||| ||| ||| | ||
Sbjct 383 GTTG-AGAGATGGTTGAAGG-AGCTTAGAG-ACCACACAGAGGCCAA-CATTGTGATCAT 438
Query 386 GCTTATAGGGAACAAGAGCG-ATTTGCGCCACTTA-GTGGCAGTCAAAACAGAAGAGGCT 443
|||| | ||||| || |||| || | || ||| || | | | || ||| ||||| |||
Sbjct 439 GCTTGTTGGGAATAA-AGCGGATCTACGTCACCTAAGAG-CTGTTTCAACTGAAGATGCT 496
Query 444 AAAGCCTTTGCTGAGAGAGA-ATCTCTTTATTTCATGGAGACATCAGCTCTTGACGCAAC 502
||||||||||| |||||||| | | | || ||| ||||||||||| || ||||| ||
Sbjct 497 AAAGCCTTTGCAGAGAGAGAGAACACATTCTTT-ATGGAGACATCTGCACTTGAAGCTTT 555
Query 503 CAATGTTGA-AAGCGCATTCACAGAAGTACTCTCTCA 538
|| ||||| || || ||||| ||||| || |||||
Sbjct 556 GAACGTTGAGAAT-GCTTTCACTGAAGTGCTTTCTCA 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33908049225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5