BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919360
Length=1217
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06440.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 1916 0.0
> AT1G06440.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr1:1963380-1965051 REVERSE LENGTH=1672
Length=1672
Score = 1916 bits (1037), Expect = 0.0
Identities = 1149/1203 (96%), Gaps = 7/1203 (1%)
Strand=Plus/Plus
Query 1 CTCCATAGACTCTTTGAGATAGTATGAGGTTCCTCCTCATGAGATCAATTCTGATTCACC 60
||||||| ||||||||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 124 CTCCATATACTCTTTGAGATACTATGAGGTTCCTCCTCATGAGATCACTTCTGGTTCACC 183
Query 61 CTTGTGGTGGCTCCATCATCAATGTCCGATCAACGACTACCTCTGCTCAATATGTAGCTT 120
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 184 CATGTGGTGGCTCCATCATCAATGTCCGATCAACGACTACGTCTGCTCAATATGTAGCTT 243
Query 121 CCAGATCAAGAGACCCTGTTTTCGAGAAGCTCATGGACAAATACAAGAACCTTCTCAAGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 CCAGATCAAGAGACCCTGTTTTCGAGAAGCTCATGGACAAATACAAGAACCTTCTCAAGG 303
Query 181 TCATTGCCATACAAGACCTTATCCTCGCCAATCCAACAGCTGATCCTCCCTCTCTATCCA 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 304 TCATTGCCATACAAGACCTTACCCTCGCCAATCCAACAGCTGATCCTCCCTCTCTATCCA 363
Query 241 TTGACTTTCTCTCCAGGCTCTCCCAGAAGCTCCACCTTAACCGTGGCGCCGCTTCTTTTT 300
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 364 TTGAGTTTCTCTCCAGGCTCTCCCAGAAGCTCCACCTTAATCGTGGCGCTGCTTCTTTCC 423
Query 301 TAAGAAAATATCCTCACATCTTTCATGTCTTGTATGATCCTGTGAAAGCTGAGCCCTTTT 360
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 TGCGAAAGTATCCTCACATCTTTCATGTCTTGTATGATCCTGTGAAAGCTGAGCCCTTTT 483
Query 361 GCAGGTTAACTGATGTAGCCTTGGAGATTTCTCGCCAAGAGGCTTTGGCTATCACTGCTA 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 484 GCAGGTTAACTGATGTAGCCATGGAGATTTCTCGCCAAGAGGCTTTGGCTATCACTGCTA 543
Query 421 CTCTGTCTCTTGTTGTTGACCGGTTGGTTAGGCTCTTGTCTATGTCCATATCAAAGTCCA 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 CTTTGTCTCTTGTTGTTGACCGGTTGGTTAGGCTCTTGTCTATGTCCATATCAAAGTCCA 603
Query 481 TTCCGCTTCGTGCGGTTTTCAAGGTTTGGAGAGAACTTGGGCTCCCAGATGATTTTGAGG 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TTCCGCTTCGTGCGGTTTTTAAGGTTTGGAGAGAACTTGGGCTCCCAGATGATTTTGAGG 663
Query 541 ACTCTGTGATATCAAAGAACCCTCATCTTTTTAAGCTTAGTGATGGTCATGAACCCAATA 600
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 664 ACTCTGTGATCTCAAAGAACCCTCATCTTTTTAAGCTTAGTGATGGTCATGAATCCAACA 723
Query 601 CCCATATCTTAGAGCTCGTTCAAGAAGAAGAGAAAAGACTGGAATTTGAGGCCGCGGTTG 660
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 724 CCCATATCTTAGAGCTGGTTCAGGAAGAAGAGAAAAGACTGGAATTTGAGGCCGCGGTTG 783
Query 661 AGAAATGGAGGGTGGTTGAGTGTTCTAAGGAGGACTGCTGTGTCGATAGAACTGA-ACTC 719
|||||||||||||||||||||||||||||||||| ||| ||||||||||||| || | ||
Sbjct 784 AGAAATGGAGGGTGGTTGAGTGTTCTAAGGAGGATTGCAGTGTCGATAGAACCGAGATTC 843
Query 720 CAGTTTAGCTTCAAACATAGTTACCCACCAGGAATGAGACTGAGCAAGACCTTTAAGGCT 779
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 844 -AGTTTAGTTTCAAACATAGTTACCCACCAGGAATGAGACTGAGCAAGACATTTAAGGCT 902
Query 780 AAAGTTAAGGAATGGCAGAGGCTGCCTTATGTAGGGCCATACGAGGACATGGTTGGGAAG 839
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 903 AAAGTTAAGGAATGGCAGAGGCTGCCTTACGTAGGGCCATACGAGGACATGGTTGGTAAG 962
Query 840 AA-AA-AGTACAGATCCGGAGTGATGGGAATAGAGAAAAGAGCGGTTGCGATTGCTCACG 897
|| || |||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AAGAAGAGTA--GATCCGGTGTGATGGGAATAGAGAAAAGAGCGGTTGCGATTGCTCACG 1020
Query 898 AGTTTCTCAGTCTGACTGTAGAGAAGATGGTGGAGGTAGAGAAGATCAGCCATTTCAGAA 957
|||| || | |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1021 AGTTCCTGAATCTGACTGTAGAGAAGATGGTGGAGGTAGAAAAGATCAGCCATTTCAGAA 1080
Query 958 AATGTTTTGGGATTGATTTGAACATAAGAGATTTGTTCTTAGATCACCCGGGCATGTTTT 1017
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1081 AATGTTTTGGGATTGATTTGAACATAAGAGATTTGTTCTTGGATCACCCGGGCATGTTTT 1140
Query 1018 ATATGTCAACTAAAGGGAAAAGACACACTGTGTTTCTCAGAGAGGCTTATGAAAGAGGGC 1077
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1141 ATGTGTCAACTAAAGGGAAAAGACACACTGTCTTTCTCAGAGAGGCTTATGAAAGAGGAC 1200
Query 1078 GTTTGATAGATCCGAATCCAGTTTACGACGCGAGGAGGAAGCTTCTTGACCTTGTTCTTT 1137
||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 1201 GTTTGATTGATCCAAATCCTGTTTACGATGCGAGGAGGAAGCTTCTTGACCTTGTTCTCT 1260
Query 1138 TGGGACGCCATGCTGCTTTATCAGAATCTGGGAGCACTAGTATGTGTGAACAAGAATGA- 1196
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1261 TGGGACGCCATGCTGCTTTATCAGAATCTGGGAACACTAGTATGTCTGAACAAGAATGAC 1320
Query 1197 ATT 1199
|||
Sbjct 1321 ATT 1323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59788849095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5