BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919361
Length=1109
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06450.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 1714 0.0
> AT1G06450.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr1:1965840-1967219 FORWARD
LENGTH=1380
Length=1380
Score = 1714 bits (928), Expect = 0.0
Identities = 1062/1124 (94%), Gaps = 20/1124 (2%)
Strand=Plus/Plus
Query 4 TCTGCAGAACTCATCATCATGAACGAGATTCATCAACCGATTGCGAGGAGAGTATGGAGA 63
||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 67 TCTGCAGAAATCATCATCATGAACGAGATTCATCAACCGCTGGCGAGGAGAGTATGGAGA 126
Query 64 AGCAACGTCGATGAAGAGATGGCTCGTATGGAGGAATGTCTCAAGAGATTCCCACTCATC 123
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 127 AGCAACGTCGATGAAGAGATGGCTCGTATGGCCGAATGTCTCAAGCGATTCCCACTCATC 186
Query 124 GCTTTCGATACAGAGTACCCTGGCATTATTTTCCGTACTTATTTCGATTCCTCTAGCGAC 183
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 187 GCTTTCGATACAGAGTACCCTGGCATTATTTTCCGCACTTATTTCGATTCCTCTAGCGAC 246
Query 184 GAATGTTACAGAGCCATGAAAGGTAATGTCGAAAACACCAAACTGATCCAGTGTGGTTTC 243
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 247 GAATGTTACAGAGCCATGAAAGGTAATGTCGAGAACACCAAGCTGATCCAGTGTGGTTTC 306
Query 244 ACTCTTTTCAACGCCAAGGGAGAGATCGGTGGCGTTTGGGAGATTAACTTCTCCAATTTC 303
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 307 ACTCTTTTCAACGCCAAGGGAGAGATCGGTGGTGTTTGGGAGATTAACTTCTCCAATTTC 366
Query 304 GGCGACCCATCAGACACACGCAACGAGATTTCGATCGAATTTTTGAGGAGACATGGTTTG 363
||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||
Sbjct 367 GGCGACCCATCAGACACACGCAACGAGCTTTCCATCGAATTCTTGAGGAGGCATGGTTTG 426
Query 364 GATTTGCAGAAGATTAGAGACGAAGGAGTTGATATGTTCGGCTACGGGTTTTTCCCAAAG 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 427 GATTTGCAGAAGATTAGAGACGAAGGAGTTGATATGTTCGGCTACGGGTTTTTCCCTAAG 486
Query 424 CTTATGACTGTGTTTCGATCTCAGAAACACGTTGAGTTCGTCACCTTTC-AAGGAGCTTA 482
||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||
Sbjct 487 CTTATGACTGTGTTTCGTTCTCAGAAACACGTTGAGTTCGTCAC-TTTCCAAGGAGCTTA 545
Query 483 CGACTTCGCTTACTTCTTGAGTATCCTCAA-CAATGGGAAGCTACCAGAGACTCACGGAG 541
||| |||||||||||||||||||||||||| || ||| |||||||||||||||||||| |
Sbjct 546 CGATTTCGCTTACTTCTTGAGTATCCTCAATCA-TGGCAAGCTACCAGAGACTCACGGCG 604
Query 542 AGTTTGCAACGGAGGTTGTCAAAGTGTTCGGTCAAGTTTATGACACCAAGGTCATGGCTG 601
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 605 AGTTTGCAACAGAGGTTGTCAAAGTGTTCGGTCAAGTTTACGACACCAAGGTCATGGCTG 664
Query 602 GATTCTGTGAAGGCCTCGGTGAACACCTCGGGTTAAGCAAACTAGCCCAGCTACTTCAGA 661
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 GATTCTGTGAAGGACTAGGTGAACACCTCGGGTTAAGCAAACTAGCCCAGCTACTTCAGA 724
Query 662 TCACTCGGGTGGGAAGAGCACACCACGCTGGTTCAGACAGCTTAATGACTGCACTTGTCT 721
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 725 TCACTCGTGTGGGAAGAGCACATCACGCTGGTTCAGACAGCTTAATGACTGCACTTGTCT 784
Query 722 TCATCAAGCTCAAACAAGTCTATGAAGATTCCAGATTTGCTAGAGGATTGATCTATGGAA 781
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 TCATCAAGCTTAAACATGTCTATGAAGATTCCAGATTTGCTAGAGGATTGATCTATGGAA 844
Query 782 TTGGGAAAAGAAACCTCGTTGCCGCCCCTGC----GC-C-TG----AG--CC---TGTTC 826
|||||||||| |||||||||||||||||||| || | || || || | |||
Sbjct 845 TTGGGAAAAGCAACCTCGTTGCCGCCCCTGCCCCTGCGCCTGTGCCAGAGCCGACTCTTC 904
Query 827 CTTTGATGTGTCAGCAGAATGTAGCTTCATATCCTGTGTTCCATAATGGATATGTCCAAA 886
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 905 CTTTGATGTGCCAGCAGAATGTAGCTTCATATCCTGTGTTCCACAATGGATATGTCCAGA 964
Query 887 ACTATGAGCAGCCTCAGCTTGTCTCCTACCATCCTTCAGCTGCCCCTTGGGCGTTCTGCA 946
||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| |
Sbjct 965 ACTATGAGCAGCCTCAGCTTGTCTCCTACGATCCTTCAGGTGCCCCATGGGCGTTCTGTA 1024
Query 947 ATGCTACCGGTACGTACGTGCAGCTTACTCATCTACCTGCAAACACTTTTGCATACCCGT 1006
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1025 ATGCTACCGGTACGTATGTGCAGCTTACTCATCTACCTGCAAGCACTTTTGCATACCCGT 1084
Query 1007 CTCAGACGCCATCTGCTGCAGTTGATTATCTTGGACCAGTTCCTAATTATTACAATAATA 1066
||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1085 CTCAGACGCCATCTGCTACTGTTGATTATCTTGGACCAGTTCCTAATTATTACAACAATA 1144
Query 1067 ATGCTTGCTATGTAGTTGAGTAGATTGAGATTTCCC-AGCTTTA 1109
|||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1145 ATGCTTGCTACGTAGTTGAGTAGATTGAGATTTCCCCAGCTTTA 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54367190235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5