BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919363
Length=1286
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06470.1 | Symbols: | Nucleotide/sugar transporter family p... 2159 0.0
> AT1G06470.1 | Symbols: | Nucleotide/sugar transporter family
protein | chr1:1969729-1973767 FORWARD LENGTH=1834
Length=1834
Score = 2159 bits (1169), Expect = 0.0
Identities = 1242/1278 (97%), Gaps = 2/1278 (0%)
Strand=Plus/Plus
Query 1 CTGGTGAGTTCAGATTATTGATGGAGCAAAGAGTGCAGCTCCGTGGTGGTACAATAGAAG 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 343 CTGGTGAGTTCAGATTATTGATGGAGCAAAGAGTGCAGCTCCGTGTTGGTACAATGGAAA 402
Query 61 CTATATCCAATCAGGTAGATGTAGACAGAGAACAGGTTTTAGAGCCGTTTGATATTGAAA 120
| ||||||||| ||| ||||||||| |||||||||||||||||| | |||| ||||||||
Sbjct 403 CCATATCCAATGAGGGAGATGTAGATAGAGAACAGGTTTTAGAGACTTTTGGTATTGAAA 462
Query 121 ATGAGACCGGGAAGGAGACAAACGGCTCCAGAAGTTTTGATGTTGGTTACAGTTCCGGTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 ATGAGACCGGGAAGGAGACAAACGGCTCCAGAAGTTTTGATGTTGGTTACAGTTCCGGTG 522
Query 181 ATAACCTCGAAACATTGCCTAAAGCGTCAAAAACGGATATCTCTCCTGCTGACGTGCTTA 240
||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 523 ATACCCTTGAAACATTGCCTAAAGCGTCAAAAGTAGATATCTCTCCTGCTGACGTGCTTA 582
Query 241 AAACACTGTTCTTTATACTTGTATGGTACACTTTCAGCACATTTTTGACTCTGTACAACA 300
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 583 AAACACTCTTCTTTATACTTGTATGGTACACTTTCAGCACATTTCTGACTCTGTACAACA 642
Query 301 AAACTCTCTTAGGAGATGATTTAGGGAAATTTCCTGCTCCCTTATTAATGAATACCATTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 AAACTCTCTTAGGAGATGATTTAGGGAAATTTCCTGCTCCCTTATTAATGAATACCATTC 702
Query 361 ACTTTTCTATTCAAGCTGTTTTATCAAAGATGATAACATGGTATTGGTCGGGGAGATTTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 ACTTTTCTATTCAAGCTGTTTTATCAAAGATGATAACATGGTATTGGTCGGGGAGATTTC 762
Query 421 AACCTGATGTTACCATATCATGGAGAGACTATTTCGTTAGAGTTGTACCAACAGCGCTTG 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 AGCCTGATGTTACCATATCATGGAGAGACTATTTCGTTAGAGTTGTACCAACAGCGCTTG 822
Query 481 GAACTGCTATGGATATAAACCTAAGTAATGAGTCACTTGTCTTCATATCGGTTACATTTG 540
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 823 GAACTGCTATGGATATAAACCTAAGTAACGAGTCACTTGTCTTCATATCGGTTACATTTG 882
Query 541 CAACAATGTGCAAATCTGCAGCCCCAATATTTCTTCTTCTGTTTGCTTTTGCCTTCAGGC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 CAACAATGTGCAAATCTGCAGCCCCAATATTTCTTCTTCTGTTTGCTTTTGCCTTCAGGC 942
Query 601 TGGAGTCTCCAAGCCTGAAACTTTTTGGCATTATTTCAGTGATCTCAGCAGGAGTGTTGT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 TGGAGTCTCCAAGCCTGAAACTTTTTGGCATTATTTCAGTGATCTCAGCAGGAGTGTTGT 1002
Query 661 TAACAGTTGCAAAGGAGACAGAATTTGAGTTTTGGGGTTTCGTTTTTGTCATGCTTGCTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 TAACAGTTGCAAAGGAGACAGAATTTGAGTTTTGGGGTTTCGTTTTTGTCATGCTTGCTG 1062
Query 721 CTGTCATGTCTGGTTTCCGCTGGTGTATGACACAAGTTCTTTTGCAGAAAGAAACCTTTG 780
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1063 CTGTCATGTCTGGTTTCCGCTGGTGTATGACGCAAGTTCTTTTGCAGAAAGAAACATTTG 1122
Query 781 GCCTGAAAAATCCATTCATATTCATGAGCTGTGTGGCACCAGTGATGGCGATAGTGACTG 840
| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1123 GACTGAAAAATCCATTCATATTCATGAGCTGTGTGGCACCAGTGATGGCTATAGCGACTG 1182
Query 841 GTCTTCTTTCTCTCCTTCTGGATCCATGGAGTGAATTTAGAGACAACAAATACTTTGATA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 GTCTTCTTTCTCTCCTTCTGGATCCATGGAGTGAATTTAGAGACAACAAATACTTTGATA 1242
Query 901 GTGGAGCACAttttgctcgaacttgttttttgatgctttttggcggagcactggcttttt 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 GTGGAGCACATTTTGCTCGAACTTGTTTTTTGATGCTTTTTGGCGGAGCACTGGCTTTTT 1302
Query 961 gtatggttttgACAGAGTATGTCCTTGTTTCCGTAACCAGTGCTGTAACCGTCACAATAG 1020
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1303 GTATGGTTTTGACAGAGTATGTCCTTGTTTCCGTAACTAGTGCTGTAACCGTCACAATAG 1362
Query 1021 CGGGCGTTGTTAAAGAGGCTGTCACCATAGTGGTTGCAGTATTTTACTTCCACGACGAAT 1080
|||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1363 CGGGAGTTGTCAAAGAGGCTGTCACCATAGTGGTTGCAGTGTTTTACTTCCATGACGAAT 1422
Query 1081 TTACGTGGCTGAAAGGTGTGGGTCTGATGATTATTATGGTTGGTGTCAGTTTGTTCAACT 1140
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1423 TTACGTGGCTGAAAGGTGTGGGTCTGATGATCATTATGGTTGGTGTCAGTTTGTTCAACT 1482
Query 1141 GGTACAAATATGATAAACTACAAAAGGGTCACAAAACAGAGGATGAGACGCAGTTACAAG 1200
|||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||
Sbjct 1483 GGTACAAATATGATAAACTACAAAAGGGGCACAAAACAGAGGAAGAGAAGCAGTTACAAG 1542
Query 1201 CTCCAAGTCAGACTGGAAAATATGTGATTCTTGATGAGATGGATGATCAAGAAAATAGTC 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1543 CTCCAAGTCAGACTGGAAAATATGTGATTCTTGATGAGATGGATGATCAAGAAAATAGTC 1602
Query 1261 CCTAAGGATTTTAttttt 1278
|||||| ||| ||||||
Sbjct 1603 CCTAAGAATT--ATTTTT 1618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63252686700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5