BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919366

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G06500.1 | Symbols:  | unknown protein; Has 25 Blast hits to...   549    8e-156


> AT1G06500.1 | Symbols:  | unknown protein; Has 25 Blast hits 
to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:1989479-1990730 FORWARD 
LENGTH=680
Length=680

 Score =  549 bits (297),  Expect = 8e-156
 Identities = 394/437 (90%), Gaps = 21/437 (5%)
 Strand=Plus/Plus

Query  18   ACGATGATGCATTCGACGGTGCAGCATGGTGGG-AACAAGAGTGGCAAGTCCAATGTATG  76
            ||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct  123  ACGATGATGCATTCGACGGTGCAGCATGG-GGGAAACAAGAGTGGCAAGTCAAATGTATG  181

Query  77   GGCTAACACTAATTTGGCAAAGACAGTGGCAGCTTTAGATGAGTTCAAATTTGGATTCCC  136
            |||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  182  GGCTAATACTAACTTGGCAAAGACAGTGGCAGCTGTAGATGAGTTCAAATTTGGATTCCC  241

Query  137  ATCAGGCGGGTTAACAACTGTGTCAAACAAATGGTGGGGAAGGCCAGAGAAAGGCGGACG  196
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  242  ATCAGGCGGGTTAACAACTGTGTCAAACAAATGGTGGGGAAGGGCAGAGAAAGGCGGACG  301

Query  197  CA-AAGATGGTGGAGGAGAGAATACTGAAGATGGAGATGGAGATGTCAAGGACGAAGCA-  254
             | ||||||||||||||||||| |||||| |   |  |||| |||| | |  | | ||  
Sbjct  302  -AGAAGATGGTGGAGGAGAGAACACTGAA-A---A--TGGACATGT-A-G--C-A-GCTT  348

Query  255  GCTTCTCATACACAAAATTCTTTGGTAGCTATTAGGAAAAGAATAGCGGAACAAGGAAGA  314
            | |  | | || ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  349  G-TGATGAGACGCAAAATTCTTTGGTAGCTATTAGGAAAAGAATAGCGGAAGAAGGAAGA  407

Query  315  GAAGCTGTTGAACTTGGTCTGCATCGAGGATTTTGTTCAAAAAGACCAGACAAGAGAGAT  374
            ||||| ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||
Sbjct  408  GAAGCGGTTGAACTTGGTCTGCATCAAGGATTTGGTTCAAAAAGACCAGGCAAGAGAGAT  467

Query  375  CAAGCTTTACTGTTTCAGATCTTCAACTCTGCACTGCCAAAGGATTGGGTTAC---TGAT  431
            |||||||| |||||||||||||||||||||||| |||||||||||||||||||   ||||
Sbjct  468  CAAGCTTTGCTGTTTCAGATCTTCAACTCTGCAATGCCAAAGGATTGGGTTACCCCTGAT  527

Query  432  TCTTCTTAAATTCGTTT  448
            ||||| ||| |||||||
Sbjct  528  TCTTCCTAAGTTCGTTT  544



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21916738564


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5