BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919369
Length=1962
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06520.1 | Symbols: ATGPAT1, GPAT1 | glycerol-3-phosphate ac... 3072 0.0
> AT1G06520.1 | Symbols: ATGPAT1, GPAT1 | glycerol-3-phosphate
acyltransferase 1 | chr1:1993978-1996112 REVERSE LENGTH=1995
Length=1995
Score = 3072 bits (1663), Expect = 0.0
Identities = 1867/1967 (95%), Gaps = 8/1967 (0%)
Strand=Plus/Plus
Query 1 TCTCTCTCTAAGCCATAGCTATGGTTTTACCAGAGCTTCTAGTGATTCTAGCAGAATGGG 60
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 26 TCTCTCTCTACGCCATAGCTATGGTTTTACCAGAGCTTCTCGTGATTCTAGCAGAATGGG 85
Query 61 TTCTTTACCGTCTTCTTGCTAATTCATGTTACAGAGCTGCTAGAAAGCTTAGAGGCTATG 120
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 86 TTCTTTACCGTCTTCTTGCTAAATCATGTTACAGAGCTGCTAGAAAGCTCAGAGGCTATG 145
Query 121 GTTTCCAATTGAAAAATCTCCTAAGCCTCTCTAAAGCacaatctcaacacaacaactctc 180
||||||| || |||||||||||||||||||| ||| ||||||||| ||||||||| ||||
Sbjct 146 GTTTCCAGTTAAAAAATCTCCTAAGCCTCTCCAAAACACAATCTCTACACAACAATTCTC 205
Query 181 atcatcaacaccagcaa-caacaacaacaaaatcagcaaaacCAGTCTCTTCAAGATTCT 239
| ||||| | || || || || ||||||||||| | ||||| | ||||||||||||
Sbjct 206 AGCATCATCTTCA-TAACCATCATCAACAAAATCACCCTAACCAAACCCTTCAAGATTCT 264
Query 240 CTAAACCCTATCTTCCCAAGCATTACAAAGTACCAAGAA---CTTGTAGACAAAAACAGA 296
||| ||||| | ||||||||| ||||||| ||||||||| ||| ||||||||||||||
Sbjct 265 CTAGACCCTCTGTTCCCAAGCCTTACAAAATACCAAGAACTTCTTCTAGACAAAAACAGA 324
Query 297 GCATGCTCTGTTTCGTCTGATCATCATCTTGATACCTTTGTCTGCGACGTCGATGGTGTT 356
|||||||||||||||||||||||| ||| |||||||||| ||||||| |||||||||||
Sbjct 325 GCATGCTCTGTTTCGTCTGATCATTATCGTGATACCTTTTTCTGCGATATCGATGGTGTT 384
Query 357 TTATTAAGACAACATTCGAGCAAACACTTCCACACGTTCTTCCCTTACTTCATGCTCGTG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 TTATTAAGACAACATTCGAGCAAACACTTCCACACGTTCTTCCCTTACTTCATGCTCGTG 444
Query 417 GCTTTTGAAGGAGGATCGATCATCAGAGCGATCCTTCTCTTGCTCTCTTGTTCTTTCCTC 476
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 445 GCTTTTGAAGGAGGATCGATCATCAGAGCGATCCTTCTCTTGCTCTCCTGTTCTTTCCTT 504
Query 477 TGGACTCTGCAACAAGAAACCAAACTCAAAGTCCTCTCTTTTATTACCTTCTCTGGTCTT 536
|||||||||||||||||||||||||||| ||| |||||||| || |||||||||||||||
Sbjct 505 TGGACTCTGCAACAAGAAACCAAACTCAGAGTTCTCTCTTTCATAACCTTCTCTGGTCTT 564
Query 537 AAAGTCAAAGATATGGACAACGTTTCTAGATCGGTTCTACCCAAATTCTTCCTCGAGAAC 596
| ||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 565 AGAGTCAAAGACATGGACAATGTTTCTAGATCGGTTCTACCAAAATTCTTCCTCGAGAAC 624
Query 597 TTGAATCTTCAGGTGTACGACATCTGGGCTCGAACTGAGTACTCCAAAGTTGTGTTCACG 656
|||||| | || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 TTGAATATCCAAGTTTACGACATCTGGGCTCGAACTGAGTACTCCAAAGTTGTGTTCACG 684
Query 657 AGCTTGCCGCAAGTGCTGGTGGAGAGGTTCCTCAGAGAACATCTCAACGCTGATGATGTG 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 AGCTTGCCGCAAGTGCTGGTGGAGAGGTTCCTCAGAGAACATCTCAACGCTGATGATGTG 744
Query 717 ATTGGGACTAAACTGCAAGAAATAGAAGTCATGGGGAGGAGAA-TCTACACAGGCCTAGC 775
|||||||||||||||||||||||| |||||||||| |||| || ||||||||||||||||
Sbjct 745 ATTGGGACTAAACTGCAAGAAATAAAAGTCATGGGAAGGA-AATTCTACACAGGCCTAGC 803
Query 776 TTCTGGTTCTGGTTTCGTCGTGAAACATAAATCAGCTGAAGACTACTTCCTCGATAACAA 835
||||||||||||||||||| |||||||||||||||||||||||||||| | |||| |||
Sbjct 804 TTCTGGTTCTGGTTTCGTCCTGAAACATAAATCAGCTGAAGACTACTTTTTTGATAGCAA 863
Query 836 GAAGAAGCCTGCTCTTGGAATTGGATGCTCTTCAAGCCCACAAGATCACATCTTCATCTC 895
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 864 GAAGAAGCCTGCACTTGGAATTGGAAGCTCTTCAAGCCCACAAGATCACATCTTCATCTC 923
Query 896 CATTTGCAAAGAAGCTTATCTTTGGAATGAAGAAGAGTCCATGAACGAGAACAACACACT 955
||||||||||||||||||| |||||||||||||||||||||||| | |||||||| || |
Sbjct 924 CATTTGCAAAGAAGCTTATTTTTGGAATGAAGAAGAGTCCATGAGCAAGAACAACGCATT 983
Query 956 GCCTAGAGAAAGATACCCAAAGCCATTGATATTCCACGACGGGAGGTTGGCTTTCTTGCC 1015
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 984 GCCTAGAGAAAGATACCCAAAGCCACTGATATTCCACGACGGGAGATTGGCTTTCTTGCC 1043
Query 1016 AACACCATTAGCTACATTAGCTATGTTCATATGGCTCCCTATCGGATTCTTCCTCGCTGT 1075
||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 1044 AACACCATTAGCTACATTAGCCATGTTCATATGGCTCCCTATCGGATTTTTACTCGCTGT 1103
Query 1076 CTTCAGGATCTCGGTAGGAGTCTTGCTTCCTTACCATGTAGCCAATTTCTTGGCTTCTAT 1135
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1104 CTTCAGGATCTCGGTAGGAGTCTTTCTTCCTTACCATGTAGCCAATTTCTTGGCTTCTAT 1163
Query 1136 GTCCGGTGTTAGGATCACTTTCAAGACTCATAATTTGAATAACGGTCGTCCAGAGAAAGG 1195
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1164 GTCCGGTGTTAGGATCACTTTCAAGACCCATAATTTGAATAACGGTCGTCCAGAGAAAGG 1223
Query 1196 TAAAAGTGGAGTCTTGTATGTATGCAACCATAGGACCCTCCTTGACCCAGTTTTCCTCAC 1255
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1224 TAATAGTGGAGTCTTGTATGTATGCAACCATAGGACCCTCCTCGACCCAGTTTTCCTCAC 1283
Query 1256 CACTTCGCTTGGCAAGCCCTTGACCGCGGTTACTTACAGCCTAAGCAAGTTCTCCGAGCT 1315
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1284 CACTTCGCTGGGCAAGCCCTTGACCGCGGTTACTTACAGCCTAAGCAAGTTCTCCGAGTT 1343
Query 1316 CATAGCACCTCTCAAGACGGTTAGCCTTAAAAGAGATAGGAAGAAAGACGGCGAGGCAAT 1375
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1344 CATAGCACCTCTCAAGACGGTTAGCCTTAAAAGAGATAGGAAGAAAGACGGTGAGGCAAT 1403
Query 1376 GCAGAGGTTATTAAGCAAAGGAGATCTAGTGGTTTGTCCCGAAGGAACCACTTGTAGAGA 1435
|||||| ||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 1404 GCAGAGACTATTAAGCAAAGGAGATCTAGTGGTTTGTCCGGAGGGAACCACATGTAGAGA 1463
Query 1436 GCCTTATCTACTAAGATTCAGTCCTCTGTTCGCTGAGTTAACAGAAGACATTGTTCCCGT 1495
||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1464 GCCTTATCTACTAAGGTTCAGTCCTTTGTTCGCTGAGTTAACTGAAGACATTGTTCCCGT 1523
Query 1496 GGCTGTGGATGCTCGAGTGAGCATGTTCTATGGGACAACCGCGAGCGGGCTCAAGTGTTT 1555
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1524 GGCTGTAGATGCTCGAGTGAGCATGTTCTATGGGACAACTGCGAGCGGGCTCAAGTGTTT 1583
Query 1556 AGACCCTATCTTCTTCCTCATGAACCCTAGGCCGGTTTATTGTCTTGAGGTTTTGAAGCA 1615
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
Sbjct 1584 AGACCCTATCTTCTTCCTCATGAACCCTAGGCCGGTTTATTGTCTTGAGATTTTAAAGAA 1643
Query 1616 GTTGCCAAAGGAGATGACTTGTGCAGGAGGCAAGTCAAGCTTTGAAGTTGCGAATTTCAT 1675
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1644 GTTGCCAAAAGAGATGACTTGTGCAGGAGGCAAGTCAAGCTTTGAAGTTGCGAATTTCAT 1703
Query 1676 ACAGGGAGAACTTGCTAGGGTTTTGGGATTTGAATGCACTAATCTCACAAGGAGGGATAA 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1704 ACAGGGAGAACTTGCTAGGGTTTTGGGATTTGAATGCACTAATCTCACAAGGAGGGATAA 1763
Query 1736 GTACTTGGTTCTTGCTGGAAATGAAGGCATTGTCAGATAAAATAATCCGAATTTTCATTA 1795
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1764 GTACTTGGTTCTTGCTGGAAATGAAGGCATTGTCAGATAAACTATTCCGAATTTTCATTA 1823
Query 1796 GTTTTGTTTGTTTGTTTGAAAAGCAAAATATTATTGTTATTTCAGGACTTAGATGTTTAA 1855
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1824 GTTTT-TTTGTTTGTTTGAAAAGCTAAATATTATTGTTATTTCAGGACTTAGATGTTTAA 1882
Query 1856 TTCTATATGGTTGATTCATTGGCATCATTTCTATTTCTTATCACTCGGGACCATTGATAT 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1883 TTCTATATGGTTGATTCATTGGCATCATTTCTATTTCTTATCACTCGGGACCATTGATAT 1942
Query 1916 GTATTGGAAATGTTTGCTTTATATGATTTTGTTTCTGGATTTGTATA 1962
|||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1943 GTATTGAAAATGTTTGCTTTATATGATTTTGTTTCTGGATTTGTATA 1989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97188255120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5