BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919375
Length=2797
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06590.1 | Symbols: | unknown protein; Has 380 Blast hits t... 4577 0.0
> AT1G06590.1 | Symbols: | unknown protein; Has 380 Blast hits
to 268 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa
- 245; Fungi - 73; Plants - 49; Viruses - 0; Other Eukaryotes
- 13 (source: NCBI BLink). | chr1:2016308-2024662 REVERSE
LENGTH=3104
Length=3104
Score = 4577 bits (2478), Expect = 0.0
Identities = 2684/2785 (96%), Gaps = 8/2785 (0%)
Strand=Plus/Plus
Query 1 TGAGTGTTTTAGCGACGGAGAGATATGGCCGGATTAACGAGAACGGCCGGTGCTTTTGCG 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 TGAGTGTTTTAGCGACAGAGAGATATGGCCGGATTAACGAGAACGGCCGGTGCTTTTGCG 193
Query 61 GTAACTCCACACAAGATCTCCGTTTGCATTCTCCTCCAGATATACGCTCCTTCCGCTCAG 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 194 GTAACTCCACACAAGATCTCCGTTTGCATTCTCCTGCAGATATACGCTCCTTCCGCTCAG 253
Query 121 ATGTCTCTTCCTTTTCCTTTCTCTTCCGTTGCTCAGCACAACCGCCTCGGCCTCTACTTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 ATGTCTCTTCCTTTTCCTTTCTCTTCCGTTGCTCAGCACAACCGCCTCGGCCTCTACTTG 313
Query 181 CTCTCCCTCACTAAGTCTTGCGATGATATATTTGAGCCGAAGCTGGAAGAGCTCATCAAC 240
||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 314 CTCTCTCTTACTAAGTCTTGCGATGATATATTTGAGCCGAAGCTGGAAAAGCTCATCAAC 373
Query 241 CAGTTGAGGGAAGTTGGCGAAGAGATGGATGCGTGGCTAACTGACCATTTAACTAATAGA 300
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 374 CAGTTGAGGGAAGTTGGTGAAGAGATGGACGCGTGGCTAACTGACCATTTAACTAATAGA 433
Query 301 TTTTCCGCTTTAGCTTCACCAGATGATCTATTAAATTTCTTTAATGACATGCGAGGAATA 360
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 TTTTCCTCTTTGGCTTCACCAGATGATCTATTAAATTTCTTTAATGACATGCGAGGAATA 493
Query 361 CTTGGGAGCCTTGATTCAGGAGTTGTGCAAGATGATCAGATTATTTTGGATCCCAACAGC 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 494 CTTGGGAGCCTTGATTCAGGAGTCGTGCAAGATGATCAGATTATTTTGGATCCCAACAGC 553
Query 421 AACTTGGGAATGTTTGTTCGTCGTTGCATTTTGGCATTCAACCTTTTATCGTTCGAGGGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 AACTTGGGAATGTTTGTTCGTCGTTGCATTTTGGCATTCAACCTTTTATCGTTCGAGGGA 613
Query 481 GTTTGTCATCTTTTTTCAAGCATTGAAGATTACTGCAAAGAAGCCCATTCAAGCTCTGCT 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 614 GTTTGTCATCTTTTTTCAAGTATTGAAGATTACTGCAAAGAAGCCCATTCAAGCTTTGCT 673
Query 541 CAGTTTGATGCATCTAATAATAATTTGGAGTCATTAACACAATATGATCAGATGGATATG 600
||||||| |||| ||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 674 CAGTTTGGTGCACCTAATAATAATCTGGAGTCATTAATACAATATGATCAGATGGATATG 733
Query 601 GAAAATTATGCAATGGATAAAGCAACTGAAGAAATAGAGTTTCAGAAAAGTGCTAGTGGA 660
|| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 734 GAGAATTATGCAATGGATAAACCAACTGAAGAAATAGAGTTTCAGAAAACTGCTAGTGGA 793
Query 661 ATTGTCCCTTTTCACCTTCATACACCAGAATCACTTTTCAAAGCGACAGAAGGTTTGCTA 720
||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||
Sbjct 794 ATTGTCCCTTTTCACCTTCATACACCAGATTCACTTATGAAAGCGACAGAAGGTTTGCTA 853
Query 721 CATACTAGGAAGGAAACATCAAGAACCGGCAAGAAAGATACAGAAGCTACTCCAGTTGCT 780
|||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 854 CATAATAGGAAGGAAACATCAAGGACCAGCAAGAAAGATACAGAAGCTACTCCAGTTGCT 913
Query 781 CGTGCCTCATCAAGTACACTTGAGG-ATACTCTGGTTGATGAGTCATTATTCCTTCGGAC 839
||||||||| ||||||||||||||| || ||||||| |||||||||||||||||||||||
Sbjct 914 CGTGCCTCAACAAGTACACTTGAGGAAT-CTCTGGTAGATGAGTCATTATTCCTTCGGAC 972
Query 840 AAATTTGCAGATACAAGGCTTTTTAATGGAACAGGCCGATGCAATTGAAACCCATGGAAG 899
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 973 AAATTTGCAGATACAAGGCTTTTTAATGGAACAGGCCGATGCAATTGAAATCCATGGAAG 1032
Query 900 TTCAAGTTCATTCTCTTCAAGTTCCATTGAAAGTTTCCTTGAGCAGCTTCAGAATTTAGC 959
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 1033 TTCAAGTTCATTCTCTTCAAGTTCCATCGAAAGTTTCCTTGATCAGCTTCAGAAATTAGC 1092
Query 960 CCCTGAATTGCATCGCGTTCACTTTTTGCGTTACTTGAATAAACTTCACAGTGATGACTA 1019
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 CCCTGAACTGCATCGTGTTCACTTTTTGCGTTACTTGAATAAACTTCACAGTGATGACTA 1152
Query 1020 TTTTGCTGCTTTGGATAATCTCCTCCGTTACTTTGATTACAGTGCAGGGACTGAGGGATT 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 CTTTGCTGCTTTGGATAATCTCCTCCGTTACTTTGATTACAGTGCAGGGACTGAGGGATT 1212
Query 1080 TGATCTTGTGCCTCCTTCAACTGGTTGCAGCATGTATGGAAGGTACGAGATTGCTTTGTT 1139
||| ||||| |||||||||||||| |||||||||||||||||||||||||||| |||| |
Sbjct 1213 TGACCTTGTTCCTCCTTCAACTGGCTGCAGCATGTATGGAAGGTACGAGATTGGTTTGCT 1272
Query 1140 ATGTTTGGGAATGACGCATTTCCGCTTTGGGCATCCTAATCTGGCTCTGGAGGTTTTAAC 1199
|||| ||||||||| ||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 1273 ATGTCTGGGAATGATGCATTTCCGATTTGGGCATCCTAATCTGGCTCTAGAGGTTTTGAC 1332
Query 1200 AGAAGCTGTGCGTGTATCGCAGCAGCTTAGTAACGATACTTGTCTAGCATATACGCTAGC 1259
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1333 AGAAGCTGTGCGTGTATCACAGCAGCTTAGTAATGATACTTGTCTAGCATATACGCTAGC 1392
Query 1260 AGCAATGAGCAACTTGTTATCAGAAATGGGCATTGCAAGTACCACCTGTGTTCTTGGATC 1319
||||||||||||||||||||| ||||||||||||||||||||| || ||||||| |||||
Sbjct 1393 AGCAATGAGCAACTTGTTATCGGAAATGGGCATTGCAAGTACCTCCGGTGTTCTCGGATC 1452
Query 1320 CTCGTACTCACCCGTCACTAGCACTGCGTCTTCATTATCTGTACAACAAAGAGTGTACAT 1379
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 CTCATACTCACCCGTCACTAGCACTGCGTCTTCATTATCTGTACAACAAAGAGTGTACAT 1512
Query 1380 ACTTTTGAAAGAGTCTTTGAGGAGAGCTGACAGTCTAAAGTTAAGACGCTTAGTGGCTTC 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513 ACTTTTGAAAGAGTCTTTGAGGAGAGCTGACAGTCTAAAGTTAAGACGCTTAGTGGCTTC 1572
Query 1440 TAATCATCTTGCAATGGCTAAATTTGAGTTGATGCATGTGCAAAGGCCTCTACTGTCATT 1499
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 TAATCATCTTGCGATGGCTAAATTTGAGTTGATGCATGTGCAAAGGCCTCTACTGTCATT 1632
Query 1500 TGGTCCCAAAGCTTCTACGCATCACAAAACTTGTCCAGTTAGTGTCTGCAAGGAAATAAG 1559
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1633 TGGTCCCAAAGCTTCTATGCGTCACAAAACTTGTCCAGTTAGTGTCTGCAAGGAAATAAG 1692
Query 1560 ACTAGGGGCACACCTAATCAGCGACTTTTCTTCTGAAAGCTCTACAATGACAATTGATGG 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 ACTAGGGGCACACCTAATCAGCGACTTTTCTTCTGAAAGCTCTACAATGACAATTGATGG 1752
Query 1620 TTCTCTAAGCTCGGCTTGGCTTAAAGACTTGCAAAAACCATGGGGTCCACCTGTGATTTC 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1753 TTCTCTAAGCTCGGCTTGGCTTAAAGACTTGCAAAAACCATGGGGTCCACCTGTGATTTC 1812
Query 1680 CC-AGGAATCTGGTTCTAGAAAAAGTTCGACTTTTTTCCAGTTCTGTGATCATTTAGTCT 1738
|| || | || ||||||||||||||||| |||||||| || ||||||||||||| ||||
Sbjct 1813 CCCAG-ACTCCGGTTCTAGAAAAAGTTCAACTTTTTTTCAACTCTGTGATCATTTGGTCT 1871
Query 1739 CAATTCCTGGATCTGTGGCACAATTAATAGGTGCTTCATATTTACTCCGGGCTACTTCAT 1798
||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1872 CAATTCCTGGATCCGTGTCACAATTAATAGGTGCTTCTTATTTACTCCGGGCTACTTCAT 1931
Query 1799 GGGAGTTATTTGGCAGCGCTCCTATGGCTCGGATGAATACCTTGGTGTATGCAACTTTAT 1858
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1932 GGGAGTTATATGGCAGCGCTCCCATGGCTCGGATGAATACCTTGGTGTATGCAACTTTAT 1991
Query 1859 TCGGTGACTCTTCTAGTTCATCTGACGCAGAGTTAGCATACTTGAAGCTCATTCAACATT 1918
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1992 TCGGTGACTCTTCTAGTTCGTCTGACGCAGAGTTAGCATACTTGAAGCTCATTCAACATT 2051
Query 1919 TGGCACTATATAAAGGATACAAAGATGCCTTTGCTGCTCTTAAGATCGCAGAGGAAAAGT 1978
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2052 TGGCACTATATAAGGGATACAAAGATGCCTTTGCTGCTCTTAAGGTCGCAGAGGAAAAGT 2111
Query 1979 TCTTAACCGTATCAAAATCAAAAATATTGTTGCTCAAGTTGCAGA-TACTACATGAGCGT 2037
||||||||||||| ||||||||| ||||||||||||||||||| | ||||||||||||||
Sbjct 2112 TCTTAACCGTATCGAAATCAAAAGTATTGTTGCTCAAGTTGCA-ACTACTACATGAGCGT 2170
Query 2038 GCCTTGCATTGTGGGAATCTACAACTAGCTCAACGAATATGTAATGAGCTAGGAGGCTTG 2097
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 2171 GCCTTGCATTGTGGGAATTTAAAACTAGCTCAACGAATATGTAATGAGCTAGGAGGCTTG 2230
Query 2098 GCATCAACAGCCATGGGTGTAGACATGGAGCTGAAAGTAGAAGCAAGTCTTCGTGAAGCT 2157
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2231 GCATCAACAGCCATGGGTGTAGACATGGAGCTAAAAGTAGAAGCAAGTCTTCGTGAAGCT 2290
Query 2158 CGGACTTTGCTTGCAGCAAAACAGTATAGCCAGGCAGCAAATGTGGCACACTCCCTCTTC 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2291 CGGACTTTGCTTGCAGCAAAACAGTATAGCCAGGCAGCAAATGTGGCACACTCCCTCTTC 2350
Query 2218 TGCACATGTCACAAATTCAATTTGCTAATCGAAAAGGCGTCTGTTCTTCTTCTGCTCGCA 2277
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2351 TGCACATGTCACAAATTCAATTTGCAAATCGAAAAGGCGTCTGTTCTTCTTCTGCTCGCA 2410
Query 2278 GAGATCCATAAGAAGTCAGGAAATGCGGTCCTGGGTCTTCCATATGCGCTGGCAAGCATT 2337
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2411 GAGATCCATAAGAAGTCAGGAAATGCTGTCCTGGGTCTTCCATATGCGCTGGCAAGCATC 2470
Query 2338 TCGTTTTGCCAGTCATTCAACTTGGATCTTCTCAAAGCATCAGCTACTCTCACACTGGCC 2397
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2471 TCGTTTTGCCAGTCATTCAACTTGGATCTTCTCAAAGCATCAGCTACTCTCACTCTGGCC 2530
Query 2398 GAGCTGTGGCTTGGTCTTGGATCAGATCATGCTAAACGAGCATTAGACCTTTTGCATGGG 2457
||||| |||||||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct 2531 GAGCTTTGGCTTGGTCTTGGATCAAATCATACCAAACGAGCATTAGACCTTTTGCATGGG 2590
Query 2458 GCTTTCCCTATGATTCTTGGCCATGGAGGTTTGGAGTTGCGTGCTCGAGCTTACATCTTT 2517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 GCTTTCCCTATGATTCTTGGCCATGGAGGTTTGGAGTTGCGTGCTCGAGCTTACATCTTT 2650
Query 2518 GAAGCAAACTGCTATCTGTCTGATCCAAGTTTTTCAGTTTCCACAGATTCTGACACTGTC 2577
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2651 GAAGCAAACTGCTATCTATCTGATCCAAGTTCTTCAGTTTCCACAGATTCTGACACTGTC 2710
Query 2578 CTGGATTCTCTAAGGCAAGCTTCAGATGAGCTTCAAGCTTTGGAGTACCATGAACTGGCA 2637
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2711 TTGGATTCTCTAAGGCAAGCTTCAGATGAGCTTCAAGCTTTGGAGTACCATGAACTGGCA 2770
Query 2638 GCGGAAGCCTCATACTTAATGGCGATGGTATATGACAAGCTTGG-ACAGCTTGATGAGAG 2696
||||||||||| ||||||||||| ||||||||||||||| |||| || ||||||||||||
Sbjct 2771 GCGGAAGCCTCGTACTTAATGGCCATGGTATATGACAAG-TTGGGACGGCTTGATGAGAG 2829
Query 2697 GGAAGAAGCTGCGTCTTTGTTTAAGATGCATATCATAGCTCTCGAGAACCCTCAAGGTGT 2756
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 2830 GGAAGAAGCTGCGTCTTTGTTTAAGAAACATATCATAGCTCTCGAGAACCCTCAAGATGT 2889
Query 2757 CGAACAAAACATGGCTTGAGATGTT 2781
|||||||||||||| |||||||||
Sbjct 2890 GGAACAAAACATGGCATGAGATGTT 2914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138962432110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5