BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919381
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06660.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2285 0.0
> AT1G06660.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G30820.2);
Has 166 Blast hits to 144 proteins in 35 species: Archae -
0; Bacteria - 17; Metazoa - 13; Fungi - 20; Plants - 104; Viruses
- 0; Other Eukaryotes - 12 (source: NCBI BLink). | chr1:2037311-2040246
REVERSE LENGTH=1694
Length=1694
Score = 2285 bits (1237), Expect = 0.0
Identities = 1423/1509 (94%), Gaps = 27/1509 (2%)
Strand=Plus/Plus
Query 1 GCTCTTGAAGAAATCAAATGATATGAGACG-CTTGTTGATGAATCGAAACCTAAGTCCCT 59
|||||||| ||||||||||||||||||||| | |||||||||| ||||||||||| ||||
Sbjct 77 GCTCTTGAGGAAATCAAATGATATGAGACGAC-TGTTGATGAACCGAAACCTAAGCCCCT 135
Query 60 TGTGCAGATCCGTGCTCAGATTCATCGATTTATCTGTTTGTAGGGCCATGGCTTGCTTTC 119
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||
Sbjct 136 TGTGCAGATCCGTGCTCAGATTCATCGATTTATCAGTCTGTAGAGCCATGGCTTGTTTTC 195
Query 120 TCGATTGCTTCCGCGCCAGAGACAATCGCTCTACTAGTAATCTCGTCTCTCACTCTTCAC 179
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 196 TCGACTGCTTCCGCGCCAGAGACAATCGCTCTACTAGTAATCTCGTCTCTCATTCTTCAC 255
Query 180 TCGCCAATCCCAGAAAACG-TCAGGACTCGCAGAATGATTTGTCAGCTTTGTTTCTTTCT 238
|||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 256 TCGCCAATTCCAGAAAA-GCACAGGACTCGCAGAATGATTTGTCAGCTTTGTTTCTTTCT 314
Query 239 GAAGAGAAAGCAGCTTCCTCGCCTTGCCATGACAAAGAAAGATTTGATTTGGATTCTATT 298
||||||||| ||||||| |||||||||| ||||||||||||||||||||| ||||||||
Sbjct 315 GAAGAGAAATCAGCTTCTTCGCCTTGCCTTGACAAAGAAAGATTTGATTTAGATTCTATA 374
Query 299 CATATTGACAAAGGCCTAAGGGACGAGGCACGGTTTCTTAAAGCTTGTGGTACTATACCG 358
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 375 CATATTGACAAAGGCCTTAGGGATGAGGCGCGGTTTCTTAAAGCTTGTGGTACTATACCG 434
Query 359 GAGACACCTATTGAAATTAGGAAAGGATCCCAAAAACTAAGTAGTCCTCAACATTCTGGA 418
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 435 GAGACACCTATTGAAATTAGGAAAGCATCCCAAAAACT---TAGTCCTCAACATTCTGGA 491
Query 419 TCTTCCCATTTTCACTCATGGATTTCCAGTAGCT-CTGCGATTGGGTCTCATCTGGCTGA 477
|||||||||||||||||||||||||||||||||| || | || ||||||| | |||||||
Sbjct 492 TCTTCCCATTTTCACTCATGGATTTCCAGTAGCTCCT-CTATGGGGTCTCGTTTGGCTGA 550
Query 478 ATCCACAACCCCCATGAAAGCTTGTGAAGAGGTGGGAAGACCATCATTCACTTCAGAGCA 537
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 551 ATCCTCAACCCCCATGAAAGCTTGTGAAGAGGTGGGAAGACCATCATTTACTTCAGAGCA 610
Query 538 AACAACTAGCAGTTGTGTAATTGATGTACGGGACAGTGCAAGGATCTCTTCTGCTTCTAG 597
|||| |||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||
Sbjct 611 AACAGCTAGCAGTTGTGTAATCGATGTCCGGGACAATGCAAGGATCTCTTCTGCATCTAG 670
Query 598 TGATGGTACTGAAGTAGAAAGCGTTGGCACTGCAATCAAGGGTGAATTGGATAGAACTGC 657
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 671 TGATGGTACTGAGGTAGAAAGCGTTGGCACTGCAATCAAGGGTGAGTTGGATAGAACGGC 730
Query 658 CAGGCCAACGTTCACAGCTGGAAAGAATAAGTCTGTCCGGTTTGAATGTGATCTTGATCA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 CAGGCCAACGTTCACAGCTGGAAAGAATAAGTCTGTCCGGTTTGAATGTGATCTTGATCA 790
Query 718 ATCACATTCTTCTAATTCTTCCGAGAATAGCAGTTCAAGAAAACCCGAGATGGGTGGCAA 777
|||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 791 ATCAAACTCTTCTAATTCTTCCGAGAATGGCAGTTCAAGAAAACCCGAGATGGGTGGCAA 850
Query 778 AATTTGTTTCACAGTGAGCTCGCCTAATCCAACCCCCTTGAAGCTATCTGATGAGATGCA 837
||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 851 AATTTGTTTTACAGTGAGCTCACCTAATCCAACCCCCTTGAAACTATCTGATGAGATGCA 910
Query 838 AACTCCTGGAACCATATATCCTGCAAACATGGAATCAGCAGGAAGGGGGAGGCCTAGAAT 897
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 911 AACTCCTGGAACCATATATCCTGCAAACATGGAATCAGGGGGAAGGGGGAGGCCTAGAAT 970
Query 898 CAGGTCGCAGTTTGTGCATTCAGTTTCCAATATAATGGAAAATGCATCCTTATATAAG-T 956
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 971 CAGGTCACAGTTTGTGCATTCAGTTTCCAATATAATGGAAAATGCATCCTTATATAAGGT 1030
Query 957 GCTACATGGATTCACATGGGAG-CCTAGATTACGAAGAGCAGATAGAGGGTGAAACACCC 1015
||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 1031 -CTACAAGGATTCACATGA-AGGCCTAGATTACGAAGAGCAGATAGAGGCTGAAACACCC 1088
Query 1016 TCTTCAGCAACTTATGGTGAAAAGGTGGAAGAAAGCTCTGATGAGAAATTGTCCAAGTTT 1075
||||||| ||||||||||||||| |||||||||||||| ||||||||| |||||||||||
Sbjct 1089 TCTTCAGAAACTTATGGTGAAAAAGTGGAAGAAAGCTCAGATGAGAAACTGTCCAAGTTT 1148
Query 1076 GAGGCAAGTTTTTCTCCTTGGCTAAACCAGATCAACGAAGACAGTAACGAAAACATTGCG 1135
||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1149 GAGGCAAGTTTTTCTCCTTGGCTAAACCAGATCAA---------T---GAAAACATTGCG 1196
Query 1136 GTTTTAAATGAAAGGACACCAGGAGTAGCTGCCATAACCCCAGGTGACAGGCCTATCATT 1195
| |||||||||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 1197 GCTTTAAATGAAAGGACACCAGGAGTCGGTGTCATAACCCCAGGTGACAGGCCTATCATT 1256
Query 1196 GGATTGGTTGCTGCTCAGTGGATCGAGGATGAGCAAACTGAGATTTCACCCAAATTGTGG 1255
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1257 GGATTGGTTGCTGCTCAGTGGATCGAGAATGAGCAAACTGAGATTTCACCCAAAATGTGG 1316
Query 1256 GATGGAAATGGGATCCCAAATTCGACAACCAAATATAAGGAGGATCAGAAAGTGAGTTGG 1315
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1317 GATGGAAATGGGATCCCAAATTCGACAACCAAATACAAGGAGGATCAGAAAGTGAGTTGG 1376
Query 1316 CATGCAACACCATTTGAAGTGAGACTGGAGAAGGCACTTTCTGAAGAAGGTGGTCAGAGT 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 CATGCAACACCATTTGAAGTGAGACTGGAGAAGGCACTTTCTGAAGAAGGTGGTCAGAGT 1436
Query 1376 TTATTCCCTCAAAGGAAACTTGAAGTGATGATGGAGGAGGTTGAAGGGGACACAGACATA 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TTATTCCCTCAAAGGAAACTTGAAGTGATGATGGAGGAGGTTGAAGGGGACACAGACATA 1496
Query 1436 TCGCAGCTGCAGCATTCAGTGCAACCAAACTCGGTAGTTTCCTTCTGAAAGTCCTC-TCG 1494
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 1497 TCGCAGCTGCACCATTCAGTGCAACCAAACTCGGTAGTTTCCTTCTGAAAGTC-TCCTTG 1555
Query 1495 GCTTTCGTA 1503
|||||||||
Sbjct 1556 GCTTTCGTA 1564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74146204965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5