BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg919381 Length=1503 Score E Sequences producing significant alignments: (Bits) Value AT1G06660.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2285 0.0 > AT1G06660.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30820.2); Has 166 Blast hits to 144 proteins in 35 species: Archae - 0; Bacteria - 17; Metazoa - 13; Fungi - 20; Plants - 104; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | chr1:2037311-2040246 REVERSE LENGTH=1694 Length=1694 Score = 2285 bits (1237), Expect = 0.0 Identities = 1423/1509 (94%), Gaps = 27/1509 (2%) Strand=Plus/Plus Query 1 GCTCTTGAAGAAATCAAATGATATGAGACG-CTTGTTGATGAATCGAAACCTAAGTCCCT 59 |||||||| ||||||||||||||||||||| | |||||||||| ||||||||||| |||| Sbjct 77 GCTCTTGAGGAAATCAAATGATATGAGACGAC-TGTTGATGAACCGAAACCTAAGCCCCT 135 Query 60 TGTGCAGATCCGTGCTCAGATTCATCGATTTATCTGTTTGTAGGGCCATGGCTTGCTTTC 119 |||||||||||||||||||||||||||||||||| || ||||| ||||||||||| |||| Sbjct 136 TGTGCAGATCCGTGCTCAGATTCATCGATTTATCAGTCTGTAGAGCCATGGCTTGTTTTC 195 Query 120 TCGATTGCTTCCGCGCCAGAGACAATCGCTCTACTAGTAATCTCGTCTCTCACTCTTCAC 179 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 196 TCGACTGCTTCCGCGCCAGAGACAATCGCTCTACTAGTAATCTCGTCTCTCATTCTTCAC 255 Query 180 TCGCCAATCCCAGAAAACG-TCAGGACTCGCAGAATGATTTGTCAGCTTTGTTTCTTTCT 238 |||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 256 TCGCCAATTCCAGAAAA-GCACAGGACTCGCAGAATGATTTGTCAGCTTTGTTTCTTTCT 314 Query 239 GAAGAGAAAGCAGCTTCCTCGCCTTGCCATGACAAAGAAAGATTTGATTTGGATTCTATT 298 ||||||||| ||||||| |||||||||| ||||||||||||||||||||| |||||||| Sbjct 315 GAAGAGAAATCAGCTTCTTCGCCTTGCCTTGACAAAGAAAGATTTGATTTAGATTCTATA 374 Query 299 CATATTGACAAAGGCCTAAGGGACGAGGCACGGTTTCTTAAAGCTTGTGGTACTATACCG 358 ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| Sbjct 375 CATATTGACAAAGGCCTTAGGGATGAGGCGCGGTTTCTTAAAGCTTGTGGTACTATACCG 434 Query 359 GAGACACCTATTGAAATTAGGAAAGGATCCCAAAAACTAAGTAGTCCTCAACATTCTGGA 418 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 435 GAGACACCTATTGAAATTAGGAAAGCATCCCAAAAACT---TAGTCCTCAACATTCTGGA 491 Query 419 TCTTCCCATTTTCACTCATGGATTTCCAGTAGCT-CTGCGATTGGGTCTCATCTGGCTGA 477 |||||||||||||||||||||||||||||||||| || | || ||||||| | ||||||| Sbjct 492 TCTTCCCATTTTCACTCATGGATTTCCAGTAGCTCCT-CTATGGGGTCTCGTTTGGCTGA 550 Query 478 ATCCACAACCCCCATGAAAGCTTGTGAAGAGGTGGGAAGACCATCATTCACTTCAGAGCA 537 |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 551 ATCCTCAACCCCCATGAAAGCTTGTGAAGAGGTGGGAAGACCATCATTTACTTCAGAGCA 610 Query 538 AACAACTAGCAGTTGTGTAATTGATGTACGGGACAGTGCAAGGATCTCTTCTGCTTCTAG 597 |||| |||||||||||||||| ||||| ||||||| |||||||||||||||||| ||||| Sbjct 611 AACAGCTAGCAGTTGTGTAATCGATGTCCGGGACAATGCAAGGATCTCTTCTGCATCTAG 670 Query 598 TGATGGTACTGAAGTAGAAAGCGTTGGCACTGCAATCAAGGGTGAATTGGATAGAACTGC 657 |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 671 TGATGGTACTGAGGTAGAAAGCGTTGGCACTGCAATCAAGGGTGAGTTGGATAGAACGGC 730 Query 658 CAGGCCAACGTTCACAGCTGGAAAGAATAAGTCTGTCCGGTTTGAATGTGATCTTGATCA 717 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 731 CAGGCCAACGTTCACAGCTGGAAAGAATAAGTCTGTCCGGTTTGAATGTGATCTTGATCA 790 Query 718 ATCACATTCTTCTAATTCTTCCGAGAATAGCAGTTCAAGAAAACCCGAGATGGGTGGCAA 777 |||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 791 ATCAAACTCTTCTAATTCTTCCGAGAATGGCAGTTCAAGAAAACCCGAGATGGGTGGCAA 850 Query 778 AATTTGTTTCACAGTGAGCTCGCCTAATCCAACCCCCTTGAAGCTATCTGATGAGATGCA 837 ||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 851 AATTTGTTTTACAGTGAGCTCACCTAATCCAACCCCCTTGAAACTATCTGATGAGATGCA 910 Query 838 AACTCCTGGAACCATATATCCTGCAAACATGGAATCAGCAGGAAGGGGGAGGCCTAGAAT 897 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 911 AACTCCTGGAACCATATATCCTGCAAACATGGAATCAGGGGGAAGGGGGAGGCCTAGAAT 970 Query 898 CAGGTCGCAGTTTGTGCATTCAGTTTCCAATATAATGGAAAATGCATCCTTATATAAG-T 956 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 971 CAGGTCACAGTTTGTGCATTCAGTTTCCAATATAATGGAAAATGCATCCTTATATAAGGT 1030 Query 957 GCTACATGGATTCACATGGGAG-CCTAGATTACGAAGAGCAGATAGAGGGTGAAACACCC 1015 ||||| ||||||||||| || |||||||||||||||||||||||||| |||||||||| Sbjct 1031 -CTACAAGGATTCACATGA-AGGCCTAGATTACGAAGAGCAGATAGAGGCTGAAACACCC 1088 Query 1016 TCTTCAGCAACTTATGGTGAAAAGGTGGAAGAAAGCTCTGATGAGAAATTGTCCAAGTTT 1075 ||||||| ||||||||||||||| |||||||||||||| ||||||||| ||||||||||| Sbjct 1089 TCTTCAGAAACTTATGGTGAAAAAGTGGAAGAAAGCTCAGATGAGAAACTGTCCAAGTTT 1148 Query 1076 GAGGCAAGTTTTTCTCCTTGGCTAAACCAGATCAACGAAGACAGTAACGAAAACATTGCG 1135 ||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 1149 GAGGCAAGTTTTTCTCCTTGGCTAAACCAGATCAA---------T---GAAAACATTGCG 1196 Query 1136 GTTTTAAATGAAAGGACACCAGGAGTAGCTGCCATAACCCCAGGTGACAGGCCTATCATT 1195 | |||||||||||||||||||||||| | || |||||||||||||||||||||||||||| Sbjct 1197 GCTTTAAATGAAAGGACACCAGGAGTCGGTGTCATAACCCCAGGTGACAGGCCTATCATT 1256 Query 1196 GGATTGGTTGCTGCTCAGTGGATCGAGGATGAGCAAACTGAGATTTCACCCAAATTGTGG 1255 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1257 GGATTGGTTGCTGCTCAGTGGATCGAGAATGAGCAAACTGAGATTTCACCCAAAATGTGG 1316 Query 1256 GATGGAAATGGGATCCCAAATTCGACAACCAAATATAAGGAGGATCAGAAAGTGAGTTGG 1315 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1317 GATGGAAATGGGATCCCAAATTCGACAACCAAATACAAGGAGGATCAGAAAGTGAGTTGG 1376 Query 1316 CATGCAACACCATTTGAAGTGAGACTGGAGAAGGCACTTTCTGAAGAAGGTGGTCAGAGT 1375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1377 CATGCAACACCATTTGAAGTGAGACTGGAGAAGGCACTTTCTGAAGAAGGTGGTCAGAGT 1436 Query 1376 TTATTCCCTCAAAGGAAACTTGAAGTGATGATGGAGGAGGTTGAAGGGGACACAGACATA 1435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1437 TTATTCCCTCAAAGGAAACTTGAAGTGATGATGGAGGAGGTTGAAGGGGACACAGACATA 1496 Query 1436 TCGCAGCTGCAGCATTCAGTGCAACCAAACTCGGTAGTTTCCTTCTGAAAGTCCTC-TCG 1494 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || | | Sbjct 1497 TCGCAGCTGCACCATTCAGTGCAACCAAACTCGGTAGTTTCCTTCTGAAAGTC-TCCTTG 1555 Query 1495 GCTTTCGTA 1503 ||||||||| Sbjct 1556 GCTTTCGTA 1564 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74146204965 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5