BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919385
Length=1126
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06700.1 | Symbols: | Protein kinase superfamily protein | ... 1884 0.0
> AT1G06700.1 | Symbols: | Protein kinase superfamily protein
| chr1:2052483-2055280 REVERSE LENGTH=1535
Length=1535
Score = 1884 bits (1020), Expect = 0.0
Identities = 1092/1127 (97%), Gaps = 3/1127 (0%)
Strand=Plus/Plus
Query 1 TATTGAAGAAGTGAACAAGGATGCGCAAGTGGATCTGTTGTACATGTCAGATAGAAGACT 60
||||||| |||| |||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 163 TATTGAACAAGTAAACAAGGATGCGTAAGTGGATCTGTTGTACATGTCAAATAGAAGACT 222
Query 61 CAAATGAAGAGCAACAACTGAAAAGTTCGCAGCAGCAATCTGATGCAAATCATAAGAATC 120
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 223 CAAATGAAGAGCAACAACTGAAAAGTTCACAGCAGCAATCTGATGCAAATCATAAGAATT 282
Query 121 CAAAACCAGCACCTGTTGCAAAAC-TCGAGATGAAGAAGGAAGCTCTTCCAATCGAGGTC 179
|||||||||||||||||||||||| | ||| | ||||||||||||||||| |||||||||
Sbjct 283 CAAAACCAGCACCTGTTGCAAAACAT-GAGGTTAAGAAGGAAGCTCTTCCCATCGAGGTC 341
Query 180 CCTCCCTTGTCTTTGGATGAGGTGAAGGAAAAGACTGAAAATTTCGGATCGAAGGCACTG 239
||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 342 CCTCCCTTGTCTTTGGATGAGGTCAAGGAAAAGACTGAAAATTTTGGATCCAAGGCACTG 401
Query 240 ATTGGTGAAGGGTCTTACGGGAGAGTATATTATGCGACACTAAATGATGGTGTAGCGGTT 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 402 ATTGGTGAAGGGTCTTATGGGAGAGTATATTATGCGACACTAAATGATGGTGTGGCGGTT 461
Query 300 GCTCTGAAGAAACTTGATGTCGCCCCTGAAGCTGAAACAGATGCCGAATTCTTGAGTCAG 359
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 462 GCTCTGAAGAAACTTGATGTCGCACCTGAAGCTGAAACAGATACCGAATTCTTGAGTCAG 521
Query 360 GTTTCCATGGTCTCTAGGCTGAAGCATGAAAATCTCATTCAATTGCTTGGTTTTTGTGTT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 GTTTCCATGGTCTCTAGGCTGAAGCATGAAAATCTCATTCAATTGCTTGGTTTTTGTGTT 581
Query 420 GATGGAAACCTACGCGTCCTTGCATATGAGTTTGCAACAATGGGGTCGTTGCATGACATC 479
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 582 GATGGAAACCTCCGCGTCCTTGCATATGAGTTTGCAACAATGGGATCGTTGCATGACATC 641
Query 480 TTGCATGGTAGGAAGGGAGTTCAAGGGGCACAGCCAGGTCCAACACTTGACTGGATAACG 539
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 642 TTGCATGGTAGGAAGGGAGTTCAAGGAGCACAACCAGGTCCAACACTTGACTGGATAACG 701
Query 540 AGGGTGAAGATAGCGGTTGAGGCAGCTAGGGGTTTGGAATACCTTCATGAGAAGTCTCAG 599
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 702 AGGGTGAAGATAGCGGTTGAGGCAGCTAGGGGTTTGGAATACCTCCATGAGAAGTCTCAG 761
Query 600 CCTCCTGTAATCCATAGAGACATAAGATCTAGCAATGTCCTTCTTTTTGAAGACTACAAA 659
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 CCTCCTGTAATCCATAGGGACATAAGATCTAGCAATGTCCTTCTTTTTGAAGACTACAAA 821
Query 660 GCAAAGATTGCTGATTTCAATCTCTCGAATCAAGCACCTGATAATGCTGCCCGTCTTCAC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 GCAAAGATTGCTGATTTCAATCTCTCGAATCAAGCACCTGATAATGCTGCCCGTCTTCAC 881
Query 720 TCAACAAGAGTCTTGGGGACTTTTGGTTATCATGCTCCGGAATATGCAATGACTGGACAG 779
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 882 TCAACAAGAGTCTTGGGGACTTTTGGTTATCATGCTCCAGAATATGCAATGACTGGACAG 941
Query 780 TTGACTCAGAAGAGTGATGTGTACAGCTTTGGGGTTGTTCTTCTAGAACTTCTTACAGGG 839
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 942 TTAACTCAGAAGAGTGATGTGTACAGCTTTGGTGTTGTACTTCTAGAACTTCTTACAGGG 1001
Query 840 AGGAAACCAGTGGATCATACCATGCCTCGGGGTCAACAGAGTCTTGTAACCTGGGCGACA 899
|||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1002 AGGAAACCGGTGGATCATACCATGCCTAGAGGTCAACAGAGTCTTGTAACCTGGGCGACA 1061
Query 900 CCAAGACTCAGTGAAGATAAAGTGAAACAGTGCATTGATCCAAAGCTAAAAGCCGATTAC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 CCAAGACTCAGTGAAGATAAAGTGAAACAGTGCATTGATCCAAAGCTAAAAGCCGATTAC 1121
Query 960 CCTCCAAAAGCAGTTGCTAAGCTAGCAGCAGTGGCAGCATTGTGTGTGCAATACGAAGCT 1019
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1122 CCTCCAAAAGCAGTTGCTAAGCTAGCAGCGGTGGCAGCATTGTGTGTGCAATACGAAGCT 1181
Query 1020 GAGTTTAGACCAAATATGAGCATAGTTGTGAAGGCGCTACAGCCTCTCCTGAAACCTCCA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 GAGTTTAGACCAAATATGAGCATAGTTGTGAAGGCGCTACAGCCTCTCCTGAAACCTCCA 1241
Query 1080 GCCGCAGCTCCAGCACCAGAATCTTGAAACTCTTTTAATCttttttt 1126
|| |||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1242 GCAGCAGCTCCAGCACCAGAATCTTGAAACT-TTTAAATCTTTTTTT 1287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55220599500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5