BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919388
Length=1513
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06730.1 | Symbols: | pfkB-like carbohydrate kinase family ... 2362 0.0
> AT1G06730.1 | Symbols: | pfkB-like carbohydrate kinase family
protein | chr1:2067529-2070446 FORWARD LENGTH=1968
Length=1968
Score = 2362 bits (1279), Expect = 0.0
Identities = 1439/1515 (95%), Gaps = 16/1515 (1%)
Strand=Plus/Plus
Query 4 TTT-CTGGGTTTTTCTGAATGTATCACCACGCTTTTTCCCTAAAATTCCACTCCTTCTCT 62
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 87 TTTCCTGGGTTTTTCTGAATGTATCACCACGCTTTTTCCCTAAAATTTCACTCCTTCTCT 146
Query 63 CCTCACTATGCGTTATCCCTCTCCAATTTCTCTACCCAAAGCCCTAATCCTCTCCTCCCT 122
|||||||||||||||||||||||||||||||| ||||||||||||||| | || || ||
Sbjct 147 CCTCACTATGCGTTATCCCTCTCCAATTTCTCCACCCAAAGCCCTAAT-C-CT-CT-CC- 201
Query 123 AATTTCCCGCCATTCGCTAGAGTTCCGAATGTGAGCAGCTCTCTTTGCCTCCGCTGCCGG 182
||||||||||||||||||| || |||||| ||||||| |||||||||||||||||
Sbjct 202 ----TCCCGCCATTCGCTAGAGTCCCTCATGTGACCAGCTCTGTTTGCCTCCGCTGCCGG 257
Query 183 AGCAGCGCCGCTGATGTATCTCCGGTTAGATACGCCAATGGCTCCTCCTCCATCGGCTCT 242
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||| | |||
Sbjct 258 AGCAGCGCCGCTGATGTATCTCCGGTTATATACGCCGATGGCTCCTCCTCCATCTGTTCT 317
Query 243 CTCGGGGATACTGGAGGTATCGTGGTGGCCGAGAAACCTATCGATGTCGCAACCTTGGGT 302
||||||| ||||||| | ||| ||||| |||||||||||| |||||| |||||||||||
Sbjct 318 TTCGGGGAAACTGGAGATGTCGCGGTGGTCGAGAAACCTATAGATGTCTCAACCTTGGGT 377
Query 303 AATCTCTGCGTCGACATTGTTCTCAGTGTTCACGAATTGCCCCCTCCTTCTCGTGAAGAA 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 378 AATCTCTGCGTCGACATTGTTCTCAGTGTTCACGAATTGCCCCCTCCTTCTCGTGGAGAA 437
Query 363 CGCAAGGCCCTCATGGACGAACTCTCTCTTTCTCCCCCAGATAAGAAATACTGGGAAGCA 422
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 438 CGCAAGGCCCTCATGGACGAACTCTCTATGTCTCCCCCAGATAAGAAATACTGGGAAGCA 497
Query 423 GGTGGCAACTGTAACATGGCTATAGCTGCTGCTAGATTGGGGCTTCGTTGTGTTGCTATT 482
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 498 GGTGGCAACTGTAACATGGCTATAGCAGCTGCTAGATTGGGGCTTCATTGTGTTGCTATT 557
Query 483 GGTCATGTGGGGGATGAAATCTACGGTGAGTTTCTTCTAGATGTGCTTCATGAGGAAGGA 542
||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 558 GGTCACGTTGGGGATGAAATCTATGGTGAGTTTCTTCTTGATGTGCTTCATGAGGAAGGA 617
Query 543 ATAGGTACGGTTGCATTGGATAGAGGAACGAATGCCAAAGATACCAGCTCATTCTGTGAA 602
|||||||||||||||||| || ||||||| |||| ||||||||||||||||||||||||
Sbjct 618 ATAGGTACGGTTGCATTGAATGGAGGAACAAATGAAAAAGATACCAGCTCATTCTGTGAA 677
Query 603 ACTCTCATTTGCTGGGTTCTTGTGGATCCTTTGCAGAGGCATGGGTTTTGCAGTCGAGCT 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 ACTCTCATTTGCTGGGTTCTTGTGGATCCTTTGCAGAGGCATGGGTTTTGCAGTCGAGCT 737
Query 663 GATTTCAAGGAGGAACCTGCTTTCAGTTGGATCACTGACCTATCTGATGAAGTAAAGATG 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 GATTTCAAGGAGGAACCTGCTTTCAGTTGGATCACTGACCTATCTGATGAAGTAAAGATG 797
Query 723 GCAATCAGACAGTCAAAAGTTCTTTTCTGCAATGGTTATGACTTTGACGATTTCAGCCCT 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 GCAATCAGACAGTCAAAAGTTCTTTTCTGCAATGGTTATGACTTTGACGATTTCAGCCCT 857
Query 783 AGTTTTATAATGTCAACGATAGATTACGCTTCCAAAGTTGGGACAGCTATCTTCTTCGAT 842
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 858 AGTTTTATTATGTCAACGATAGATTACGCTGCCAAAGTTGGGACAGCTATCTTCTTCGAT 917
Query 843 CCTGGACCACGGGGAAAGAGTCTTTCCAAGGGAACTCCTGATGAGCGTCGAGCACTTGCT 902
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 918 CCTGGACCACGGGGAAAGAGTCTGTCCAAGGGAACTCCTGATGAGCGTAGAGCACTTGCT 977
Query 903 CACTTCTTAAGAATGAGTGATGTTCTTCTTCTAACATCTGAGGAGGCGGAGGCTCTAACT 962
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 978 CATTTCTTAAGAATGAGTGATGTTCTTCTTCTAACATCTGAGGAGGTGGAGGCTCTAACT 1037
Query 963 GGCATCAGGAACCCTGTAAAAGCAGGACAAGAAATTCTGAGGAATGGAAAGGGAACGAAA 1022
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1038 GGCATCAGGAACCCTGTTAAAGCAGGACAAGAAATTCTGAGGAACGGAAAGGGAACGAAA 1097
Query 1023 TGGGTGATTGTAAAGATGGGCGCGAAGGGTTCAATTCTAGTGACGAAGTCTAGTGTCTCG 1082
||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 1098 TGGGTGATTGTAAAGATGGGCCCAAAGGGTTCAATTCTAGTGACGAAATCTAGTGTCTCA 1157
Query 1083 GTGGCACCTGCGTTTAAGGTGGAAGTGGTTGACACTGTTGGATGTGGAGACAGTTTTGTG 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 GTGGCACCTGCGTTTAAGGTGGAAGTGGTTGACACTGTTGGATGTGGAGACAGTTTTGTG 1217
Query 1143 GCTGCAATTGCATTAGGTTATATACGCAACATGCCGCTTGTTAATACGTTAACAATTGCA 1202
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1218 GCTGCAATTGCATTAGGTTATATACGCAACATGCCGCTTGTTAATACCTTAACAATTGCA 1277
Query 1203 AATGCGGTTGGAGCAGCAACTGCAATGGGTTGTGGAGCGGGTAGAAATGTTGCAAAAAGG 1262
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1278 AATGCGGTTGGAGCAGCAACTGCAATGGGCTGTGGAGCAGGTAGAAATGTTGCAAAAAGG 1337
Query 1263 CATCAAGTGGTGGATCTGATGAAGGGCTCGAAACTCAATGACGAAGAGATGTTTTTCGAA 1322
||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||
Sbjct 1338 CATCAGGTGGTGGATCTGATGAAGGCCTCGAAACTCAATGATGAAGAGAAGTTTTTCGAA 1397
Query 1323 CAACTACTGGCTGAAAATTCAGAATC-TCCTAGAATCAATCTACTTTCAAAAGGGATGAT 1381
||||| ||||||||||||||||| || || |||||||||||| |||||||||||||||||
Sbjct 1398 CAACTCCTGGCTGAAAATTCAGAGTCATC-TAGAATCAATCTTCTTTCAAAAGGGATGAT 1456
Query 1382 AAAGGATGGGAG---CAACAAGCAGCAGATAGAAACAATCTCTATGGAAAAAGTGGTTTC 1438
|||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1457 AAAGGATGGGAGGAGCAACAAGCAGCTGATAGAAACAATCTCAATGGAAAAAGTGGTTTC 1516
Query 1439 TGAATTGCTTGCAGAGCTTGAACTTGGGAGGTGTTGTGTGAAGGCTTCATCTTGATTCAT 1498
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1517 TGAATTGCTTGCAGAACTTGAACTTGGGAGGTGTTGTGTGAAGGCTTCATCTTGAATC-T 1575
Query 1499 TTGAAACAAAATCGC 1513
|||||||||| ||||
Sbjct 1576 TTGAAACAAACTCGC 1590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74648210415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5