BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg919409 Length=493 Score E Sequences producing significant alignments: (Bits) Value AT1G06950.1 | Symbols: ATTIC110, TIC110 | translocon at the inn... 353 7e-97 > AT1G06950.1 | Symbols: ATTIC110, TIC110 | translocon at the inner envelope membrane of chloroplasts 110 | chr1:2130142-2135665 REVERSE LENGTH=3314 Length=3314 Score = 353 bits (191), Expect = 7e-97 Identities = 291/336 (87%), Gaps = 19/336 (6%) Strand=Plus/Plus Query 146 GGCATTTATGAGGCTTGTATATGTTTCAGCTCTTGTGTTTGGAGATGCTTCATCCTTCCT 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 879 GGCATTTATGAGGCTTGTATATGTTTCAGCTCTTGTGTTTGGAGATGCTTCATCCTTCCT 938 Query 206 TTTGCCTTGGAAGCGAGTATTGAAGGTCACAGATGCCCAGCtt----tt--t-ttCATCA 258 | | |||||||||||||||||||||||||||||||| ||| || || | ||| | | Sbjct 939 TCTACCTTGGAAGCGAGTATTGAAGGTCACAGATGCTCAGGTTGAGATTGCTATTCGTGA 998 Query 259 ACTTAATGCATGGAAACTTACATG--GTTATGTCTCTAAACA-T-GTTCTTACAGCTATT 314 | |||||| | | | | ||| | | | | |||| | | ||| || || |||| Sbjct 999 A---AATGCAAAGCAGC-TGTATGCCG-AACG-GT-TAAA-ATTAGTTGGTAGAGATATT 1050 Query 315 AACGTAGAAAACCTAGTGGACCTTAAAAAAGCACAACTATCATTCAAGCTTTCTGATGAG 374 |||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||| Sbjct 1051 AACGTAGAAAACCTTGTGGACCTTAGAAAATCACAACTATCATTCAAGCTCTCTGATGAG 1110 Query 375 CTTGCTGAAGACCTGTTTAGAGAGCATACGAGAAGAGTAGTCGTAGAGAACATTTCATCG 434 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1111 CTTGCTGAAGACCTGTTTAGAGAGCATACGAGAAAAGTAGTCGTAGAGAACATTTCATCG 1170 Query 435 GCACTCAGCATACTAAAATCCCGCACACTAGCAGCG 470 |||||||||||||| ||||||||||||| ||||||| Sbjct 1171 GCACTCAGCATACTCAAATCCCGCACACGAGCAGCG 1206 Score = 119 bits (64), Expect = 3e-26 Identities = 68/70 (97%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 32 GATTGGCCGCAGGATTTTTAGGCAAAGGCTTGAGACTGGGGAACGTGAAGGTGATGCAGA 91 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 810 GATTGGTCGCAGGATTTTTAGGCAAAGGCTTGAGACTGGGGAGCGTGAAGGTGATGCAGA 869 Query 92 ACAGCGTCGG 101 |||||||||| Sbjct 870 ACAGCGTCGG 879 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23509580796 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5