BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919409

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G06950.1 | Symbols: ATTIC110, TIC110 | translocon at the inn...   353    7e-97


> AT1G06950.1 | Symbols: ATTIC110, TIC110 | translocon at the inner 
envelope membrane of chloroplasts 110 | chr1:2130142-2135665 
REVERSE LENGTH=3314
Length=3314

 Score =  353 bits (191),  Expect = 7e-97
 Identities = 291/336 (87%), Gaps = 19/336 (6%)
 Strand=Plus/Plus

Query  146   GGCATTTATGAGGCTTGTATATGTTTCAGCTCTTGTGTTTGGAGATGCTTCATCCTTCCT  205
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  879   GGCATTTATGAGGCTTGTATATGTTTCAGCTCTTGTGTTTGGAGATGCTTCATCCTTCCT  938

Query  206   TTTGCCTTGGAAGCGAGTATTGAAGGTCACAGATGCCCAGCtt----tt--t-ttCATCA  258
             | | |||||||||||||||||||||||||||||||| ||| ||    ||  | ||| | |
Sbjct  939   TCTACCTTGGAAGCGAGTATTGAAGGTCACAGATGCTCAGGTTGAGATTGCTATTCGTGA  998

Query  259   ACTTAATGCATGGAAACTTACATG--GTTATGTCTCTAAACA-T-GTTCTTACAGCTATT  314
             |   ||||||  | | | |  |||  |  | |  | |||| | | |||  || || ||||
Sbjct  999   A---AATGCAAAGCAGC-TGTATGCCG-AACG-GT-TAAA-ATTAGTTGGTAGAGATATT  1050

Query  315   AACGTAGAAAACCTAGTGGACCTTAAAAAAGCACAACTATCATTCAAGCTTTCTGATGAG  374
             |||||||||||||| |||||||||| |||| ||||||||||||||||||| |||||||||
Sbjct  1051  AACGTAGAAAACCTTGTGGACCTTAGAAAATCACAACTATCATTCAAGCTCTCTGATGAG  1110

Query  375   CTTGCTGAAGACCTGTTTAGAGAGCATACGAGAAGAGTAGTCGTAGAGAACATTTCATCG  434
             |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  1111  CTTGCTGAAGACCTGTTTAGAGAGCATACGAGAAAAGTAGTCGTAGAGAACATTTCATCG  1170

Query  435   GCACTCAGCATACTAAAATCCCGCACACTAGCAGCG  470
             |||||||||||||| ||||||||||||| |||||||
Sbjct  1171  GCACTCAGCATACTCAAATCCCGCACACGAGCAGCG  1206


 Score =  119 bits (64),  Expect = 3e-26
 Identities = 68/70 (97%), Gaps = 0/70 (0%)
 Strand=Plus/Plus

Query  32   GATTGGCCGCAGGATTTTTAGGCAAAGGCTTGAGACTGGGGAACGTGAAGGTGATGCAGA  91
            |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  810  GATTGGTCGCAGGATTTTTAGGCAAAGGCTTGAGACTGGGGAGCGTGAAGGTGATGCAGA  869

Query  92   ACAGCGTCGG  101
            ||||||||||
Sbjct  870  ACAGCGTCGG  879



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23509580796


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5