BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg919413 Length=774 Score E Sequences producing significant alignments: (Bits) Value AT1G06960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1144 0.0 AT2G30260.1 | Symbols: U2B'' | U2 small nuclear ribonucleoprote... 529 2e-149 > AT1G06960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:2135852-2137702 FORWARD LENGTH=937 Length=937 Score = 1144 bits (619), Expect = 0.0 Identities = 725/773 (94%), Gaps = 20/773 (3%) Strand=Plus/Plus Query 1 TCGCCGAGCTCAGTTGAAAGATGTTAACGGCTGATATACCACCAAATCAGTCAATCTACA 60 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 59 TCGCGGAGCTCAGTTGAAAGATGTTAACGGCTGATATACCACCAAATCAGTCAATCTACA 118 Query 61 TAAAAAATATCAATGAGAAGATCAAGAAAGAAGAGCTGAAGAGATCTCTTTACTGTTTGT 120 ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 119 TAAAACATATCAATGAGAAGATCAAGAAAGAAGAGCTGAAGAGGTCTCTTTACTGTTTGT 178 Query 121 TCTCTCATTTTGGAAGGA-TACTTGATGTGGTTGCGTTAAAGACTCCTAAGCTCCGGGGA 179 ||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 179 TCTCTCAGTTTGGAA-GATTACTTGATGTGGTTGCGTTAAAGACTCCTAAGCTCCGGGGA 237 Query 180 CAAGCATGGGTTGTGTTTACTGAAGTCACAGCTGCTAGTC-ACGCCGTCCTTCAGATGCA 238 |||||||||||||| |||||||||||||| |||||||| | |||| |||| ||||||||| Sbjct 238 CAAGCATGGGTTGTTTTTACTGAAGTCACCGCTGCTAG-CAACGCTGTCCGTCAGATGCA 296 Query 239 AAACTTTCCATTCTATGATACCTTTTCCTCTCTTATGTTCCAGCGGATACAATATGCAAA 298 |||||||| |||||||||| | | || | |||||||||||||||||| Sbjct 297 GAACTTTCCTTTCTATGATA-------AGC-C-TA---T---GCGGATACAATATGCAAA 341 Query 299 ATCAACGTCAGATTATGTTACTAAAGCCCAAGGGACTTTTGTACCgaaagaaaagaagat 358 ||||| |||||||||||||||||||||| ||||| ||||||| || |||||||||||||| Sbjct 342 ATCAAAGTCAGATTATGTTACTAAAGCCGAAGGGTCTTTTGTTCCAAAAGAAAAGAAGAT 401 Query 359 gaagcaagaagagaaagttgaaaggaagcgacatgctgaagaaaCTCAACAACCAAGCAT 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 402 GAAGCAAGAAGAGAAAGTTGAAAGGAAGCGACATGCTGAAGAAACTCAACAACCAAGCAT 461 Query 419 GCCTAATGGCGCAACTACTCAGAACGGAATGCATGTGCCTCCTTTCCAGCCGAGTGGGCA 478 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 462 GCCTAATGGCGCAACTACTCAGAACGGAATGCCTGTGCCTCCTTTCCAGCCGAGTGGGCA 521 Query 479 AGACACGATGCCACCAAACAACATACTCTTCATTCATAATCTTCCCATTGAGATGACGAG 538 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 522 AGACACGATGCCACCAAACAACATACTCTTCATTCATAATCTTCCCATTGAGACGAATAG 581 Query 539 CATGATGCTTCAGCTGCTATTTGAGCAATACCCAGGATTCAAGGAGATAAGAATGATCGA 598 ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 582 TATGATGCTTCAGCTGCTCTTTGAGCAATACCCAGGATTCAAAGAGATAAGAATGATCGA 641 Query 599 AGCAAAACCCGGAATTGCGTTTGTGGAATATGAAGACGATGTTCAGTCTTCCATGGCCAT 658 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 642 AGCAAAACCCGGAATTGCGTTTGTGGAGTATGAAGACGATGTTCAGTCTTCCATGGCCAT 701 Query 659 GCAAGCTCTTCAGGGTTTTCAAGATCACTCCACAGAATCCAATGGTCGTCTCTTTTGCCA 718 ||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 702 GCAGGCTCTTCAGGGTTT-CAAGATCACTCCGCAGAATCCAATGGTCGTCTCTTTTGCCA 760 Query 719 AGAAGTGAAAACCAGAGTTTTGATATGCGGATGAATGGTAATGATATACTAAT 771 |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 761 AGAAGTGAAAACCAGAGTTTTGTTATGCGGATGAATGGTAATGATATACTAAT 813 > AT2G30260.1 | Symbols: U2B'' | U2 small nuclear ribonucleoprotein B | chr2:12905402-12907509 REVERSE LENGTH=929 Length=929 Score = 529 bits (286), Expect = 2e-149 Identities = 599/743 (81%), Gaps = 50/743 (7%) Strand=Plus/Plus Query 5 CGAGCTCAGTTGAAAGATGTTAACGGCTGATATACCACCAAATCAGTCAATCTACATAAA 64 |||||||| | | |||||||||||||| ||||||||||| ||||| ||||||||||| | Sbjct 61 CGAGCTCACTCG-AAGATGTTAACGGCAGATATACCACCGAATCAATCAATCTACATCCA 119 Query 65 AAATATCAATGAGAA-GATCAAGAAAGAAGAGCTGAAGAGATCTCTTTACTGTTTGTTCT 123 ||| |||| || || |||||||||||| || ||||||||||||||||||||||||||| Sbjct 120 AAACCTCAACGA-AAGGATCAAGAAAGAGGAATTGAAGAGATCTCTTTACTGTTTGTTCT 178 Query 124 CTCATTTTGGAAGGATACTTGATGTGGTTGCGTTAAAGACTCCTAAGCTCCGGGGACAAG 183 |||| ||||| |||||||||||||||||||| || |||||||| |||||||| ||||||| Sbjct 179 CTCAGTTTGGGAGGATACTTGATGTGGTTGCTTTGAAGACTCCGAAGCTCCGAGGACAAG 238 Query 184 CATGGGTT-GTGTTTACTGAAGTCACAGCTGCTAGTCACGCCGTCCTTCAGATGCAAAAC 242 | |||||| | |||| ||||||||| |||||| |||| || || | |||||||||||| Sbjct 239 CTTGGGTTACT-TTTAGTGAAGTCACTGCTGCTGGTCATGCTGTTCGTCAGATGCAAAAT 297 Query 243 TTTCCATTCTATGATACCTTTTCCTCTCTTATGTTCCAGCGGATACAATATGCAAAATCA 302 ||||| |||||||||| | | ||| | || |||||||||||||| || Sbjct 298 TTTCCCTTCTATGATA-------AAC-C-AATG---C-GC--TTACAATATGCAAAAGCA 342 Query 303 ACGTCAGATTATGT-TA-CTAAAGCCCAAGGG-ACTTTTGTACCgaaagaaaagaagatg 359 | |||||| | ||| || |||||| | |||| ||||| || || ||||| ||||||| | Sbjct 343 AAGTCAGA-T-TGTCTAGCTAAAG-CTGAGGGAACTTTCGTTCCAAAAGATAAGAAGAGG 399 Query 360 aagcaagaagagaaagttgaaaggaagc--g-acatgctgaa-g---aaaCTCAAC-AA- 410 ||||||||||| ||||||||||| |||| | | || | || | |||| | | || Sbjct 400 AAGCAAGAAGAAAAAGTTGAAAGAAAGCGTGAAGATTCCCAACGACCAAACACGGCTAAT 459 Query 411 ---CCAAGCATGCCTAATGG-CGCAACTACTC-AGAACGGAATGCATGTGCCTCCTTTCC 465 ||||| || ||||||| | ||| | | | | |||||| | | || |||| | |||| Sbjct 460 GGCCCAAG--TG-CTAATGGTC-CAAGTGC-CAATAACGGAGTCCCTGCGCCTTCGTTCC 514 Query 466 AGCCGAGTGGGCAAGACACGATGCCACCAAACAACATACTCTTCATTCATAATCTTCC-C 524 ||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| || | Sbjct 515 AGCCGAGCGGGCAAGAAACAATGCCACCAAACAACATACTCTTCATTCAGAATCTCCCAC 574 Query 525 ATTGAGATGACGAGCATGATGCTTCAGCTGCTATTTGAGCAATACCCAGGATTCAAGGAG 584 | |||| || ||||||||||| ||||| || || || || ||||| |||||||| ||| Sbjct 575 AC-GAGACAACAAGCATGATGCTACAGCTTCTCTTCGAACAGTACCCTGGATTCAAAGAG 633 Query 585 ATAAGAATGATCGAAGCAAAACCCGGAATTGCGTTTGTGGAATATGAAGACGATGTTCA- 643 |||||||||||||| |||||||| ||||| |||||||| || || ||||| |||||||| Sbjct 634 ATAAGAATGATCGACGCAAAACCAGGAATCGCGTTTGTAGAGTACGAAGATGATGTTCAA 693 Query 644 GTCTTCCATGGCCATGCAAGCTCTTCAGGGTTTTCAAGATCACTCCACAGAATCCAATGG 703 | ||||||| || |||||| ||||||| ||||| ||| |||||||| ||||||||||||| Sbjct 694 G-CTTCCATAGCTATGCAACCTCTTCAAGGTTT-CAAAATCACTCCCCAGAATCCAATGG 751 Query 704 TCGTCTCTTTTGCCAAGAAGTGA 726 || ||||||| |||||||| ||| Sbjct 752 TCATCTCTTTCGCCAAGAAATGA 774 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37625376103 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5