BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919413
Length=774
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1144 0.0
AT2G30260.1 | Symbols: U2B'' | U2 small nuclear ribonucleoprote... 529 2e-149
> AT1G06960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2135852-2137702 FORWARD LENGTH=937
Length=937
Score = 1144 bits (619), Expect = 0.0
Identities = 725/773 (94%), Gaps = 20/773 (3%)
Strand=Plus/Plus
Query 1 TCGCCGAGCTCAGTTGAAAGATGTTAACGGCTGATATACCACCAAATCAGTCAATCTACA 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TCGCGGAGCTCAGTTGAAAGATGTTAACGGCTGATATACCACCAAATCAGTCAATCTACA 118
Query 61 TAAAAAATATCAATGAGAAGATCAAGAAAGAAGAGCTGAAGAGATCTCTTTACTGTTTGT 120
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 119 TAAAACATATCAATGAGAAGATCAAGAAAGAAGAGCTGAAGAGGTCTCTTTACTGTTTGT 178
Query 121 TCTCTCATTTTGGAAGGA-TACTTGATGTGGTTGCGTTAAAGACTCCTAAGCTCCGGGGA 179
||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TCTCTCAGTTTGGAA-GATTACTTGATGTGGTTGCGTTAAAGACTCCTAAGCTCCGGGGA 237
Query 180 CAAGCATGGGTTGTGTTTACTGAAGTCACAGCTGCTAGTC-ACGCCGTCCTTCAGATGCA 238
|||||||||||||| |||||||||||||| |||||||| | |||| |||| |||||||||
Sbjct 238 CAAGCATGGGTTGTTTTTACTGAAGTCACCGCTGCTAG-CAACGCTGTCCGTCAGATGCA 296
Query 239 AAACTTTCCATTCTATGATACCTTTTCCTCTCTTATGTTCCAGCGGATACAATATGCAAA 298
|||||||| |||||||||| | | || | ||||||||||||||||||
Sbjct 297 GAACTTTCCTTTCTATGATA-------AGC-C-TA---T---GCGGATACAATATGCAAA 341
Query 299 ATCAACGTCAGATTATGTTACTAAAGCCCAAGGGACTTTTGTACCgaaagaaaagaagat 358
||||| |||||||||||||||||||||| ||||| ||||||| || ||||||||||||||
Sbjct 342 ATCAAAGTCAGATTATGTTACTAAAGCCGAAGGGTCTTTTGTTCCAAAAGAAAAGAAGAT 401
Query 359 gaagcaagaagagaaagttgaaaggaagcgacatgctgaagaaaCTCAACAACCAAGCAT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 GAAGCAAGAAGAGAAAGTTGAAAGGAAGCGACATGCTGAAGAAACTCAACAACCAAGCAT 461
Query 419 GCCTAATGGCGCAACTACTCAGAACGGAATGCATGTGCCTCCTTTCCAGCCGAGTGGGCA 478
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 462 GCCTAATGGCGCAACTACTCAGAACGGAATGCCTGTGCCTCCTTTCCAGCCGAGTGGGCA 521
Query 479 AGACACGATGCCACCAAACAACATACTCTTCATTCATAATCTTCCCATTGAGATGACGAG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 522 AGACACGATGCCACCAAACAACATACTCTTCATTCATAATCTTCCCATTGAGACGAATAG 581
Query 539 CATGATGCTTCAGCTGCTATTTGAGCAATACCCAGGATTCAAGGAGATAAGAATGATCGA 598
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 582 TATGATGCTTCAGCTGCTCTTTGAGCAATACCCAGGATTCAAAGAGATAAGAATGATCGA 641
Query 599 AGCAAAACCCGGAATTGCGTTTGTGGAATATGAAGACGATGTTCAGTCTTCCATGGCCAT 658
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 642 AGCAAAACCCGGAATTGCGTTTGTGGAGTATGAAGACGATGTTCAGTCTTCCATGGCCAT 701
Query 659 GCAAGCTCTTCAGGGTTTTCAAGATCACTCCACAGAATCCAATGGTCGTCTCTTTTGCCA 718
||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 702 GCAGGCTCTTCAGGGTTT-CAAGATCACTCCGCAGAATCCAATGGTCGTCTCTTTTGCCA 760
Query 719 AGAAGTGAAAACCAGAGTTTTGATATGCGGATGAATGGTAATGATATACTAAT 771
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 761 AGAAGTGAAAACCAGAGTTTTGTTATGCGGATGAATGGTAATGATATACTAAT 813
> AT2G30260.1 | Symbols: U2B'' | U2 small nuclear ribonucleoprotein
B | chr2:12905402-12907509 REVERSE LENGTH=929
Length=929
Score = 529 bits (286), Expect = 2e-149
Identities = 599/743 (81%), Gaps = 50/743 (7%)
Strand=Plus/Plus
Query 5 CGAGCTCAGTTGAAAGATGTTAACGGCTGATATACCACCAAATCAGTCAATCTACATAAA 64
|||||||| | | |||||||||||||| ||||||||||| ||||| ||||||||||| |
Sbjct 61 CGAGCTCACTCG-AAGATGTTAACGGCAGATATACCACCGAATCAATCAATCTACATCCA 119
Query 65 AAATATCAATGAGAA-GATCAAGAAAGAAGAGCTGAAGAGATCTCTTTACTGTTTGTTCT 123
||| |||| || || |||||||||||| || |||||||||||||||||||||||||||
Sbjct 120 AAACCTCAACGA-AAGGATCAAGAAAGAGGAATTGAAGAGATCTCTTTACTGTTTGTTCT 178
Query 124 CTCATTTTGGAAGGATACTTGATGTGGTTGCGTTAAAGACTCCTAAGCTCCGGGGACAAG 183
|||| ||||| |||||||||||||||||||| || |||||||| |||||||| |||||||
Sbjct 179 CTCAGTTTGGGAGGATACTTGATGTGGTTGCTTTGAAGACTCCGAAGCTCCGAGGACAAG 238
Query 184 CATGGGTT-GTGTTTACTGAAGTCACAGCTGCTAGTCACGCCGTCCTTCAGATGCAAAAC 242
| |||||| | |||| ||||||||| |||||| |||| || || | ||||||||||||
Sbjct 239 CTTGGGTTACT-TTTAGTGAAGTCACTGCTGCTGGTCATGCTGTTCGTCAGATGCAAAAT 297
Query 243 TTTCCATTCTATGATACCTTTTCCTCTCTTATGTTCCAGCGGATACAATATGCAAAATCA 302
||||| |||||||||| | | ||| | || |||||||||||||| ||
Sbjct 298 TTTCCCTTCTATGATA-------AAC-C-AATG---C-GC--TTACAATATGCAAAAGCA 342
Query 303 ACGTCAGATTATGT-TA-CTAAAGCCCAAGGG-ACTTTTGTACCgaaagaaaagaagatg 359
| |||||| | ||| || |||||| | |||| ||||| || || ||||| ||||||| |
Sbjct 343 AAGTCAGA-T-TGTCTAGCTAAAG-CTGAGGGAACTTTCGTTCCAAAAGATAAGAAGAGG 399
Query 360 aagcaagaagagaaagttgaaaggaagc--g-acatgctgaa-g---aaaCTCAAC-AA- 410
||||||||||| ||||||||||| |||| | | || | || | |||| | | ||
Sbjct 400 AAGCAAGAAGAAAAAGTTGAAAGAAAGCGTGAAGATTCCCAACGACCAAACACGGCTAAT 459
Query 411 ---CCAAGCATGCCTAATGG-CGCAACTACTC-AGAACGGAATGCATGTGCCTCCTTTCC 465
||||| || ||||||| | ||| | | | | |||||| | | || |||| | ||||
Sbjct 460 GGCCCAAG--TG-CTAATGGTC-CAAGTGC-CAATAACGGAGTCCCTGCGCCTTCGTTCC 514
Query 466 AGCCGAGTGGGCAAGACACGATGCCACCAAACAACATACTCTTCATTCATAATCTTCC-C 524
||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| || |
Sbjct 515 AGCCGAGCGGGCAAGAAACAATGCCACCAAACAACATACTCTTCATTCAGAATCTCCCAC 574
Query 525 ATTGAGATGACGAGCATGATGCTTCAGCTGCTATTTGAGCAATACCCAGGATTCAAGGAG 584
| |||| || ||||||||||| ||||| || || || || ||||| |||||||| |||
Sbjct 575 AC-GAGACAACAAGCATGATGCTACAGCTTCTCTTCGAACAGTACCCTGGATTCAAAGAG 633
Query 585 ATAAGAATGATCGAAGCAAAACCCGGAATTGCGTTTGTGGAATATGAAGACGATGTTCA- 643
|||||||||||||| |||||||| ||||| |||||||| || || ||||| ||||||||
Sbjct 634 ATAAGAATGATCGACGCAAAACCAGGAATCGCGTTTGTAGAGTACGAAGATGATGTTCAA 693
Query 644 GTCTTCCATGGCCATGCAAGCTCTTCAGGGTTTTCAAGATCACTCCACAGAATCCAATGG 703
| ||||||| || |||||| ||||||| ||||| ||| |||||||| |||||||||||||
Sbjct 694 G-CTTCCATAGCTATGCAACCTCTTCAAGGTTT-CAAAATCACTCCCCAGAATCCAATGG 751
Query 704 TCGTCTCTTTTGCCAAGAAGTGA 726
|| ||||||| |||||||| |||
Sbjct 752 TCATCTCTTTCGCCAAGAAATGA 774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37625376103
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5