BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919422
Length=2461
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06950.1 | Symbols: ATTIC110, TIC110 | translocon at the inn... 1491 0.0
AT1G08450.1 | Symbols: CRT3, PSL1, EBS2, AtCRT3 | calreticulin ... 627 2e-178
> AT1G06950.1 | Symbols: ATTIC110, TIC110 | translocon at the inner
envelope membrane of chloroplasts 110 | chr1:2130142-2135665
REVERSE LENGTH=3314
Length=3314
Score = 1491 bits (807), Expect = 0.0
Identities = 935/993 (94%), Gaps = 24/993 (2%)
Strand=Plus/Plus
Query 949 AGCTTGCTGAAGACCTGTTTAGAGAGCATACGAGAAAAGTAGTCGTAGAGAACATTTCAT 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 AGCTTGCTGAAGACCTGTTTAGAGAGCATACGAGAAAAGTAGTCGTAGAGAACATTTCAT 1168
Query 1009 CGGCACTCAGCATACTAAAATCCCGCACACTAGCAGC------TTTGGCATCTGTCGTGG 1062
|||||||||||||||| ||||||||||||| |||||| |||||||||||||||||
Sbjct 1169 CGGCACTCAGCATACTCAAATCCCGCACACGAGCAGCGAAGAGTTTGGCATCTGTCGTGG 1228
Query 1063 AAGAGCTTGAAAAGGTACTGGAGTTTAACAACCTGCTGGTTTCCTTGAAAAGTCATTCAG 1122
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1229 AAGAGCTTGAAAAAGTACTGGAGTTTAACAACCTGCTAGTTTCCTTGAAAAGTCATTCAG 1288
Query 1123 AGGCAGATCAATTTGCATGC--GG--GG-----------T--T-GGTGATGAGTCTGATT 1164
||||||||||||||||| || || || | | ||||||||||||||||
Sbjct 1289 AGGCAGATCAATTTGCACGCGGGGTTGGCCCTATTTCTTTGATAGGTGATGAGTCTGATT 1348
Query 1165 TTGAGAGGAGAATGGATGATTTAAAGCTCCTTTATAGAGCATATGTCACAGATGCTTTAT 1224
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1349 TTGAGAGGAGAATGGATGATTTAAAGCTCCTTTATAGAGCATATGTTACAGATGCTTTAT 1408
Query 1225 CTGGTGGGCGCATAGCAGAAAACAAGCTCGTGGCAATGAGCCAGCTTAGAAACATACTCG 1284
||||||||||| ||| |||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1409 CTGGTGGGCGCTTAGAAGAAAATAAGCTCGTGGCAATGAGCCAACTTAGAAACATACTCG 1468
Query 1285 GACTGGGAAAACGAGAAGCTGAAGCTATTAGTGTTGATGTTACGTCCAAGGCTTACCGTA 1344
| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1469 GTCTGGGAAAACGAGAGGCTGAAGCTATTAGTGTTGATGTTACGTCCAAGTCTTACCGTA 1528
Query 1345 AAAGACTTGCTAACGCTGTTTCTAATGGTGACCTTGAAGCACAAGACAGTAAAGCAAAAT 1404
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1529 AAAGACTTGCTAACGCTGTTTCTAGTGGTGACCTTGAAGCACAAGACAGTAAAGCAAAAT 1588
Query 1405 ACCTTCAAAAGCTCTGCGAAGAGCTGCACTTTGATGCACAGATGGCAGGCGCAATCCATG 1464
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1589 ACCTTCAAAAGCTCTGCGAAGAGCTGCACTTTGATGCACAGAAGGCAGGCGCAATCCATG 1648
Query 1465 AAGAAATCTATCGGCAGAAGCTTCAACAGTGTGTTATTGATGGAGAGCTGAGCGATGATA 1524
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1649 AAGAAATCTATCGGCAGAAGCTTCAACAGTGTGTTACTGATGGAGAGCTGAGCGATGACA 1708
Query 1525 ATGTTGCTGCTTTATTAAGGTTAAGAGTCATGCTCTGTATTCCCCAGCAAACTGTTGAGA 1584
|||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| |
Sbjct 1709 ATGTTGCTGCTTTATTAAGGTTAAGAGTTATGTTGTGTATTCCCCAGCAAACTGTTGATA 1768
Query 1585 CAGCTCATGCAGAAATCTGTGGAACCATATTTGAAAAGGTTGTCAGGGAGGCAATTTCTT 1644
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1769 CAGCTCATGCAGAAATCTGTGGAACCATATTTGAAAAGGTTGTCAGGGATGCCATTTCTT 1828
Query 1645 CTGGAGTGGATGGTTATGATGCTGAAACTCGCAAATCAGTAAGAAAGGCTGCACATGGTC 1704
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1829 CTGGAGTGGATGGTTATGATGCTGAAACTCGCAAATCAGTTAGAAAGGCTGCACATGGTC 1888
Query 1705 TTCGGTTATCCAGAGAGACTGCCATGTGTATTGCTAGCAAGGCTGTCCGTATGGTTTTCA 1764
||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||
Sbjct 1889 TTCGGTTATCCAGAGAGACTGCCATGTCTATTGCTAGCAAAGCTGTCCGTAGGGTTTTCA 1948
Query 1765 CAAACTATATCAGACGAGCAAGAGCAGCAGAGAACCGCACTGAGTCAGCAAAGGAGCTCA 1824
|||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 1949 CAAACTATATCAGACGAGCAAGAGCAGCCGAGAACCGTACTGATTCAGCAAAGGAGCTCA 2008
Query 1825 AGAAGATGATTGCTTTCAACACGTTAGTTGTGACTGAAATGGTGACTGACATTAAGGGAG 1884
||||||||||||||||||||||||| |||||||||||||||||| |||| || |||||||
Sbjct 2009 AGAAGATGATTGCTTTCAACACGTTGGTTGTGACTGAAATGGTGGCTGATATCAAGGGAG 2068
Query 1885 AATCTTCTGATAAGGCACCTGAGGAGGACCCTG 1917
|||||||||||||||||||||||||||||||||
Sbjct 2069 AATCTTCTGATAAGGCACCTGAGGAGGACCCTG 2101
Score = 171 bits (92), Expect = 4e-41
Identities = 100/104 (96%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 851 GGCATTTATGAGGCTTGTATATGTTTCAGCTCTTGTGTTTGGAGATGCTTCATCCTTCCT 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 GGCATTTATGAGGCTTGTATATGTTTCAGCTCTTGTGTTTGGAGATGCTTCATCCTTCCT 938
Query 911 TTTGCCTTGGAAGCGAGTATTGAAGGTCACAGATGCCCAGCTTG 954
| | |||||||||||||||||||||||||||||||| ||| |||
Sbjct 939 TCTACCTTGGAAGCGAGTATTGAAGGTCACAGATGCTCAGGTTG 982
Score = 119 bits (64), Expect = 1e-25
Identities = 68/70 (97%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 737 GATTGGCCGCAGGATTTTTAGGCAAAGGCTTGAGACTGGGGAACGTGAAGGTGATGCAGA 796
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 810 GATTGGTCGCAGGATTTTTAGGCAAAGGCTTGAGACTGGGGAGCGTGAAGGTGATGCAGA 869
Query 797 ACAGCGTCGG 806
||||||||||
Sbjct 870 ACAGCGTCGG 879
> AT1G08450.1 | Symbols: CRT3, PSL1, EBS2, AtCRT3 | calreticulin
3 | chr1:2667825-2671832 REVERSE LENGTH=1490
Length=1490
Score = 627 bits (339), Expect = 2e-178
Identities = 472/530 (89%), Gaps = 34/530 (6%)
Strand=Plus/Plus
Query 1936 AGAAAACGGTCTCTGGGAACCTCCAAAGATCCCAAATCCTGCGTTCAAAGGTCCTTGGAA 1995
|||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 830 AGAAAATGGTCTCTGGGAACCTCCAAAGATCCCAAATTCTGCGTACAAAGGTCCTTGGAA 889
Query 1996 AGC-AA-AGAATCAAGAACCCGAACTACAAGGGAAAATGGAAGAACCCATGGATAGATAA 2053
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 AGCAAAGAGAATCAAGAACCCGAACTACAAGGGAAAATGGAAGAACCCATGGATAGATAA 949
Query 2054 TCCAGAATTTGAGGATGATCCAGATCTTTACGTTCTGAAGCCGATAAAATATGCAGGCAT 2113
|||||||||||| ||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct 950 TCCAGAATTTGAAGATGATCCAGATCTTTACGTTCTGAAGTCTATCAAATATGCAGGCAT 1009
Query 2114 TGAAGTATGGCAGGTGAAGGCTGGCTCTATCTTTGACAATATCTTGATCTGTGATGACCC 2173
||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 1010 TGAAGTATGGCAGGTGAAGGCTGGCTCAATCTTTGACAATATATTGATCTGCGATGACCC 1069
Query 2174 GGAATATGCTAGAAGCATCGTGGATGACTATTTTGCCCAGCACAGGGAGTCTGAGAAGGA 2233
|| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1070 GGCATATGCAAGAAGCATCGTGGATGACTATTTTGCCCAACACAGGGAGTCTGAGAAGGA 1129
Query 2234 GTTATTTGCGGAGGCTGAGAAAGAAAAGCTAGAGAAGATGAGTTACGAGCATGGCCATAC 2293
|||||||||||| || || || || ||| |||| | | ||| | | |
Sbjct 1130 GTTATTTGCGGAAGC--AG--AG--AA---AGA-AAGA--A---A--AGC-T----AGA- 1166
Query 2294 AAATCGATGTTTACAGGAAGCTCGGAAAGCACGGGAAGAAGGTGAACGCAGGCGGAAGGA 2353
|| |||| |||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1167 GAA--GATG-----AGGAAGCTCGGATAGCACGGGAAGAAGGTGAACGCAGGCGGAAAGA 1219
Query 2354 AAGGGACCACCGGTATGGAGACAGGAGGAGGCGTTACAAACGACCGAATCCACGTGATTA 2413
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1220 AAGGGACCACCGGTATGGAGACAGGAGGAGGCGTTACAAACGGCCGAATCCACGTGATTA 1279
Query 2414 CATGGATGATTACCATGATGAGCTGTAAGGCGCAG--TGGTGGACATTTG 2461
||||||||||||||||| ||||| | |||||||| |||||| ||||||
Sbjct 1280 TATGGATGATTACCATGACGAGCTATGAGGCGCAGAGTGGTGGGCATTTG 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122106339262
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5