BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919426
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07040.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 1700 0.0
> AT1G07040.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast; EXPRESSED IN:
24 plant structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27030.1);
Has 540 Blast hits to 538 proteins in 187
species: Archae - 0; Bacteria - 333; Metazoa - 0; Fungi - 0;
Plants - 67; Viruses - 0; Other Eukaryotes - 140 (source:
NCBI BLink). | chr1:2160938-2163308 REVERSE LENGTH=1676
Length=1676
Score = 1700 bits (920), Expect = 0.0
Identities = 1078/1156 (93%), Gaps = 4/1156 (0%)
Strand=Plus/Plus
Query 6 CTCCTCATCTCTACCATGATGTCACTCCAGTCCTCCGCCATTAAAGCCTCTCTCCACCGC 65
||||| ||||| |||||||| |||||||| || || |||||||||||||||||| || ||
Sbjct 259 CTCCTTATCTCCACCATGATCTCACTCCACTCATCAGCCATTAAAGCCTCTCTCTACGGC 318
Query 66 TCGTTT-CCTTCGTCGTTACGATCAACACTCTCTGTTTCCTTCTCTGCTGGATCTCTTAT 124
|| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 TC-TTTCCCTTCTTCGTTACGATCAACACTCTCTGTTTCCTTCTCTGCTGGATCTCTTAT 377
Query 125 TCGGCTTCCCGCCGCT-GGAAACCGCGTTCTCTCCGTAGTCGCTACCTCTGGAAGAGACT 183
||||||||| ||| | || || ||| ||||||||| |||| | |||||||||||||||
Sbjct 378 TCGGCTTCCTTCCG-TCGGCAAGCGCAATCTCTCCGTCGTCGTTTCCTCTGGAAGAGACT 436
Query 184 CCTCCATGTCATCAATCAATGATTCTCGCGGATCATCTTCAAAGGTTGCTGCTGAATCTT 243
|||| |||||||||| ||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 437 CCTCGATGTCATCAAACAATGTTTCTCGCGGATCGTCTTCAAAGGTTGCTGCTGAATCTT 496
Query 244 TCTTCAGGAGTGTGTTAGGGCAGATGGAAACTGTTTACCTAAATAGAAACCCAACTCCTA 303
||||||||||||| |||||||||||||||||||||||||||||| ||||||| || ||||
Sbjct 497 TCTTCAGGAGTGTCTTAGGGCAGATGGAAACTGTTTACCTAAATCGAAACCCGACGCCTA 556
Query 304 AATCCGTCTTGGAACTTGTTCGATCCGTTGATGATGAGCAACTTTGCTATGATCATCTCG 363
||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 557 AATCCGTCTTGGAGCTTGTTCGATCTGTTGATGACCAGCAACTTTGCTATGATCATCTCG 616
Query 364 CTTTCAGAACGTTTGGAATTGGTGGTTATGGGATTGACTCGCTTGCAAGCTTTTTCCTTG 423
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 CTTTCAGAACGTTTGGGATTGGTGGTTATGGGATTGACTCGCTTGCAAGCTTTTTCCTTG 676
Query 424 ACTATGGGTATACTCCAATGGATGAACTGAAGTTTCCGGCCAAAAAGCTTAGAGCTTTGT 483
||||||| ||||| || |||||||| || || ||||||||||||||||||||||||||||
Sbjct 677 ACTATGGATATACACCGATGGATGAGCTAAAATTTCCGGCCAAAAAGCTTAGAGCTTTGT 736
Query 484 GGTTTGCACCTCCTGATGTTTCTGCTGTTCCTGGTGGAAGCGGCGTTAACGGTCCTTTAC 543
|||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 737 GGTTTGCACCTCCTAATGCTTCTGCTGTTCCTGGTGGCAGCGGCGTTAACGGTCCTTTAC 796
Query 544 CAAGAGTTTTTATCTCAGAGCTCCTTGTGGACCAGATGAGTTCACAGACTCAGGATGTGA 603
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 797 CGAGAGTTTTTATCTCAGAGCTCCTGGTGGACCAGATGAGTTCACAGACTCAGGATGTAA 856
Query 604 TTAGAAAATACACGGGAGCATCGCCCAATGGGAAAAACTATGCTGCACTTTCAAGTGCTT 663
| ||||||||||||| |||||| || ||||||||||| ||||||| |||||| |||||||
Sbjct 857 TCAGAAAATACACGGAAGCATCACCTAATGGGAAAAAGTATGCTGGACTTTCTAGTGCTT 916
Query 664 TGGGTACTTTAACTTGGGAAAAGCCTCTGTCTTCTGAGTTTGAGCAATTGGCTAGGGAAA 723
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 917 TGGGTACTTTAACTTGGGAAAAGCCTCTATCTTCTGAGTTTGAGCAATTGGCTAGGGAAA 976
Query 724 GTGAATACGCAGCATGGACCCTTGTCAATGGCTATGCACTTAACCACGTCACGATTTCTG 783
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 977 GTGAATACGCAGCATGGACCCTTGTCAATGGATATGCACTTAACCACGTCACGATTTCTG 1036
Query 784 TCCATCGGCTTAAATCTCATCTAAACAAAATCAAGAAGCTCAATCAGTTCCTTGAAGAAA 843
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1037 TTCATCGGCTTAAATCTCATCTAAACAAAATCAAGAAGCTCAATCAGTTCCTCGAAGAAA 1096
Query 844 AAGGTTTTAAATTGAACTCAGAAGGAGGAGTCCTCAAAGTTAGCCCTGATGGTGGTTTGC 903
||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1097 AAGGTATCAAATTGAACTCAGAAGGAGGAGTCCTTAAAGTTAGCCCTGATGGTGGTTTGC 1156
Query 904 AGCAAAGCTCAACTGTGGCAGATTCAATTTCTTTCAAGTTCTCTGATGGTGTCACCAAAT 963
|||||||||||||||| |||||||| || |||||||||||| |||||||||| |||||||
Sbjct 1157 AGCAAAGCTCAACTGTAGCAGATTCGATATCTTTCAAGTTCGCTGATGGTGTTACCAAAT 1216
Query 964 CTATCCCTTGTTCATACATTGAGTTTGCTGAACGCCTTGTGCTTCCCCAGTACCAAAATG 1023
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1217 CTATCCCTTGTTCATACATTGAGTTTGCTGAACGCCTTGTACTTCCGCAGTACCAAAATA 1276
Query 1024 TCCCCGAAAGCGAGATACGAGAGTCTCATCGACGCGATGGCTTTGAGGTTGGAAATGCTG 1083
| |||||||||||||||| ||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 1277 TACCCGAAAGCGAGATACAAGAGTCTCATCGACGTGATGGATTTGAGGTCGGAAATGCTG 1336
Query 1084 ACAAGATCTTCGAGAGCACATTTCAGGAGCAGCTTTCTCGACGTACCGGGTGATGGCACA 1143
||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||| |
Sbjct 1337 ACAAGATCTTCGAGAGCACATTTCAGGAGCAGCTTTCCCGACGAACCGGGTGATAGCAAA 1396
Query 1144 TAGTAGCCACGGCTTT 1159
||||||||||||||||
Sbjct 1397 TAGTAGCCACGGCTTT 1412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56877217485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5