BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919431
Length=638
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07090.1 | Symbols: LSH6 | Protein of unknown function (DUF6... 1009 0.0
> AT1G07090.1 | Symbols: LSH6 | Protein of unknown function (DUF640)
| chr1:2173952-2174894 REVERSE LENGTH=943
Length=943
Score = 1009 bits (546), Expect = 0.0
Identities = 608/637 (95%), Gaps = 8/637 (1%)
Strand=Plus/Plus
Query 1 CCaaaaaaaCCCTAGTTTTGAATGGAATCGGCGGATTCCGGGTCACAACGATCCGATCCG 60
||||||||||||||||| ||||||||||||||||||||| || |||||||||||||
Sbjct 82 CCAAAAAAACCCTAGTTCTGAATGGAATCGGCGGATTCC-GG-----ACGATCCGATCCG 135
Query 61 GTAAAAGGAGACGACACGGGTCCATCTTTCGTCTCTTCGCCACCGGCTACACCAAGCAGG 120
||||||||||||||| |||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 136 GTAAAAGGAGACGACCCGGGTCCATCTTTCGTCTCTTCACCACCAGCTACACCTAGCAGG 195
Query 121 TATGAGTCACAGAAGCGACGTGACTGGAACACTTTCTTGCAGTACCTCAAGAACCACAAG 180
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 196 TATGAGTCACAGAAGCGACGCGACTGGAACACGTTCTTGCAGTACCTCAAGAACCACAAG 255
Query 181 CCGCCTCTCGCGTTGTCACGTTGTAGCGGAGCGCACGTGATCGAATTCCTCAAGTACCTC 240
|||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||||
Sbjct 256 CCGCCTCTCGCGTTGTCACGGTGTAGCGGAGCGCATGTGATCGAGTTTCTCAAGTACCTC 315
Query 241 GACCAGTTCGGCAAGACCAAAGTCCACGTGGCGGCTTGTCCTTACTTCGGCCATCAGCAA 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GACCAGTTCGGTAAGACCAAAGTCCACGTGGCGGCTTGTCCTTACTTCGGCCATCAGCAA 375
Query 301 CCTCCGTCTCCTTGCTCATGCCCTCTCAAGCAAGCTTGGGGATCTCTCGACGCTTTGATC 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 376 CCTCCGTCTCCTTGCTCATGCCCTCTCAAGCAAGCTTGGGGATCTCTCGATGCTTTGATC 435
Query 361 GGACGGTTGAGAGCTGCCTACGAGGAGAACGGTGGACGGCCTGATTCAAACCCGTTCGCC 420
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 436 GGACGGTTGAGAGCTGCCTACGAGGAGAACGGTGGACGGCCGGATTCTAACCCGTTCGCC 495
Query 421 GCACGTGCGGT-CAGGATTTACTTAAGGGAAGTCAGAGAGAGTCAGGCCAAGGCTCGAGG 479
||||||||||| | |||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 496 GCACGTGCGGTTC-GGATTTACTTGAGGGAAGTCAGAGAGAGTCAGGCAAAGGCTCGTGG 554
Query 480 GATTCCTTACGAGAAAAAGAAACGGAAACGGCCACCAACTGTCACCACCGTTAGAGTTGA 539
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 555 GATTCCTTACGAGAAAAAGAAACGGAAACGGCCGCCAACTGTCACCACCGTTAGAGTTGA 614
Query 540 CGTCGCTTCTTCGAGACAAAGTGACGGAGACGCTTGTAACGTCGGTGCTCCATCTGTTGC 599
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 615 CGTCGCTTCTTCGAGACAAAGTGACGGAGACCCTTGTAACGTCGGTGCTCCATCTGTTGC 674
Query 600 CGAGGCCGTACCGCCTTAGATCGAATTATATATTATA 636
||||||||||||||||||||||||||||||||| |||
Sbjct 675 CGAGGCCGTACCGCCTTAGATCGAATTATATATAATA 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30793532111
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5