BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919434
Length=517
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07128.1 | Symbols: | Potential natural antisense gene, loc... 760 0.0
AT1G07130.1 | Symbols: STN1, ATSTN1 | Nucleic acid-binding, OB-... 760 0.0
> AT1G07128.1 | Symbols: | Potential natural antisense gene, locus
overlaps with AT1G07130 | chr1:2187621-2188417 REVERSE
LENGTH=797
Length=797
Score = 760 bits (411), Expect = 0.0
Identities = 464/490 (95%), Gaps = 2/490 (0%)
Strand=Plus/Minus
Query 1 TCTTCTCACCAGTTCCAGCCATGGATCGATCCCTCCAAAACACACACGCGAAACTAGTGG 60
||||||| ||||| ||||||||||||||||||||||||| ||||||||| ||||| ||||
Sbjct 510 TCTTCTCTCCAGTCCCAGCCATGGATCGATCCCTCCAAAGCACACACGCAAAACTCGTGG 451
Query 61 CGCGTGACATCCAACGCCTGACACAGTCACCTACAGAATCCAACTCTTTCTCCCTACTTG 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 450 CGCGTGACATCCAACGCCTGACACAGTCACCTACAGAATCCAACTCTTTCTCTCTGCTTG 391
Query 121 GCGGCGCGTGCGTCTCACGCGTAGAGACAGTAGGCACAATCGTCTCTCGTGACCTGACCC 180
|||| |||||||| ||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 390 GCGGAGCGTGCGTTTCACGCGTAGAGATAGTAGGCACAATCGTCTCTCGTGATCTGACCC 331
Query 181 CTAAGTTCCTCAAGTTCGGCGTCGACGATGGCACCGGCTGCGTCACGTGCGTCCTGTGGC 240
| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 330 CAAAGTTTCTCAAGTTCGGCGTCGACGATGGCACCGGCTGCGTCACGTGCGTCATGTGGC 271
Query 241 TCAACCAACTCACGTCTTCTTACTTCTCCCGGTGGCATCCAGACACGATTCTGCTGCTCG 300
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 270 TCAACCAACTCACGTCTTCTTACTTCTCCCGGTGGGATCCAGCCACGATTCTGCTGCTCG 211
Query 301 CTAGTGCCGCGCGGAAACAAGCCGCAGAGATCAGAATCGGAGCCGTGGCTCGCGTTCGCG 360
| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 210 CAAGTGCCGCGCGGAAACAAGCCGCACAAATCAGAATCGGAGCCGTGGCTCGCGTTCGCG 151
Query 361 GCCGCGTCGGCTCGTACAGAGGAGTGATGCAGATCACGGC-AACTGTGGTGGTGGTCGAG 419
|||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||
Sbjct 150 GCCGCGTCGGCTCGTACAGAGGAGTGATGCAGATCACGGCTAA-TGTGGCGGTGGCCGAG 92
Query 420 AGAGACCCGAACGCGGAGATCTTGCACTGGTTGGAGTGTTTAAGGCTCGGTCAAAGTTGT 479
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 91 AGAGACCCGAACGCGGAGATCTTGCACTGGTTGGAGTGTTTAAAGCTTGGTCAAAGTTGT 32
Query 480 TATCGTATTC 489
|||||| |||
Sbjct 31 TATCGTGTTC 22
> AT1G07130.1 | Symbols: STN1, ATSTN1 | Nucleic acid-binding, OB-fold-like
protein | chr1:2187776-2188733 FORWARD LENGTH=958
Length=958
Score = 760 bits (411), Expect = 0.0
Identities = 464/490 (95%), Gaps = 2/490 (0%)
Strand=Plus/Plus
Query 1 TCTTCTCACCAGTTCCAGCCATGGATCGATCCCTCCAAAACACACACGCGAAACTAGTGG 60
||||||| ||||| ||||||||||||||||||||||||| ||||||||| ||||| ||||
Sbjct 133 TCTTCTCTCCAGTCCCAGCCATGGATCGATCCCTCCAAAGCACACACGCAAAACTCGTGG 192
Query 61 CGCGTGACATCCAACGCCTGACACAGTCACCTACAGAATCCAACTCTTTCTCCCTACTTG 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 193 CGCGTGACATCCAACGCCTGACACAGTCACCTACAGAATCCAACTCTTTCTCTCTGCTTG 252
Query 121 GCGGCGCGTGCGTCTCACGCGTAGAGACAGTAGGCACAATCGTCTCTCGTGACCTGACCC 180
|||| |||||||| ||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 253 GCGGAGCGTGCGTTTCACGCGTAGAGATAGTAGGCACAATCGTCTCTCGTGATCTGACCC 312
Query 181 CTAAGTTCCTCAAGTTCGGCGTCGACGATGGCACCGGCTGCGTCACGTGCGTCCTGTGGC 240
| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 313 CAAAGTTTCTCAAGTTCGGCGTCGACGATGGCACCGGCTGCGTCACGTGCGTCATGTGGC 372
Query 241 TCAACCAACTCACGTCTTCTTACTTCTCCCGGTGGCATCCAGACACGATTCTGCTGCTCG 300
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 373 TCAACCAACTCACGTCTTCTTACTTCTCCCGGTGGGATCCAGCCACGATTCTGCTGCTCG 432
Query 301 CTAGTGCCGCGCGGAAACAAGCCGCAGAGATCAGAATCGGAGCCGTGGCTCGCGTTCGCG 360
| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 433 CAAGTGCCGCGCGGAAACAAGCCGCACAAATCAGAATCGGAGCCGTGGCTCGCGTTCGCG 492
Query 361 GCCGCGTCGGCTCGTACAGAGGAGTGATGCAGATCACGGC-AACTGTGGTGGTGGTCGAG 419
|||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||
Sbjct 493 GCCGCGTCGGCTCGTACAGAGGAGTGATGCAGATCACGGCTAA-TGTGGCGGTGGCCGAG 551
Query 420 AGAGACCCGAACGCGGAGATCTTGCACTGGTTGGAGTGTTTAAGGCTCGGTCAAAGTTGT 479
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 552 AGAGACCCGAACGCGGAGATCTTGCACTGGTTGGAGTGTTTAAAGCTTGGTCAAAGTTGT 611
Query 480 TATCGTATTC 489
|||||| |||
Sbjct 612 TATCGTGTTC 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24715200324
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5