BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919443
Length=1571
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07180.1 | Symbols: ATNDI1, NDA1 | alternative NAD(P)H dehy... 2492 0.0
AT2G29990.1 | Symbols: NDA2 | alternative NAD(P)H dehydrogenase... 1266 0.0
> AT1G07180.1 | Symbols: ATNDI1, NDA1 | alternative NAD(P)H dehydrogenase
1 | chr1:2204320-2206934 FORWARD LENGTH=1788
Length=1788
Score = 2492 bits (1349), Expect = 0.0
Identities = 1496/1567 (95%), Gaps = 10/1567 (1%)
Strand=Plus/Plus
Query 11 CTAACGAAATCATGTCT-TGGATCAAAAACCTCGTAAGAATCTCGCAGACCACTTCTTCG 69
|||| | |||||||| | |||||||||||||| | |||||||||||||||||||||||||
Sbjct 85 CTAAAG-AATCATGT-TGTGGATCAAAAACCTAGCAAGAATCTCGCAGACCACTTCTTCG 142
Query 70 TCGGTCGGAAACGTGTTCAGAAACCCCGAATCCTACACTCTCTCGTCCCGTTTCTGCACC 129
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 TCTGTCGGAAACGTGTTCAGAAACCCCGAATCCTACACTCTCTCGTCCCGTTTCTGCACC 202
Query 130 GCTCTCCAAAAGCAACCAG-ACACCGAGACGGTTCAAGC-AA--AGGATGTAGTTAATGG 185
||||| |||||||||| || | ||||| ||||||||||| || |||||||||||||||
Sbjct 203 GCTCTGCAAAAGCAACAAGTA-ACCGACACGGTTCAAGCAAAGGAGGATGTAGTTAATGC 261
Query 186 GTTGGAGTCACAGCGTTACGACGGTTTGGCTCCGACTAAAGAAGGTGAGAAGCCGAGGGT 245
||||||| |||| ||||||||||||||||||||||| ||||| || ||||||||||| ||
Sbjct 262 GTTGGAGCCACAACGTTACGACGGTTTGGCTCCGACGAAAGAGGGAGAGAAGCCGAGAGT 321
Query 246 TCTGGTTCTCGGGTCGGGTTGGGCGGGTTGTCGGCTTA-TGAAAGGGATCGATACGAGTA 304
| |||||||||||||||||||||||||||||||| || | |||||||||||||| ||||
Sbjct 322 TTTGGTTCTCGGGTCGGGTTGGGCGGGTTGTCGG-GTATTAAAAGGGATCGATACTAGTA 380
Query 305 TTTACGACGTCGTTTGTGTCTCTCCTAGGAACCACATGGTCTTCACTCCTCTCTTGGCTT 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 TTTACGACGTCGTTTGTGTCTCTCCTAGGAACCACATGGTCTTCACTCCTCTCTTGGCTT 440
Query 365 CTACTTGCGTTGGTACCCTTGAGTTTAGGTCCGTTGCTGAACCAATCTCTCGTATCCAAC 424
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 441 CTACTTGCGTTGGTACGCTTGAGTTTAGGTCTGTTGCTGAACCAATCTCTCGTATCCAAC 500
Query 425 CGGCGATTTCACGAGAACCCGGTTCTTATTACTTCCTCGCTAATTGCTCTAAACTTGATG 484
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 501 CGGCGATTTCACGAGAACCCGGTTCTTATTACTTCCTTGCTAATTGCTCCAAACTTGATG 560
Query 485 CTGATAATCATGAGGTGCATTGTGAGACTGTAACTGAAGGCTCTAGCACATTGAAGCCAT 544
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 561 CTGATAATCATGAGGTGCATTGTGAGACTGTAACTGAGGGGTCTAGCACATTGAAGCCAT 620
Query 545 GGAAGTTCAAGATAGCTTACGACAAACTGGTACTAGCTTGTGGTGCAGAAGCATCCACAT 604
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 621 GGAAGTTCAAGATAGCTTATGACAAACTGGTACTAGCTTGTGGTGCAGAAGCATCCACAT 680
Query 605 TTGGAATTAATGGCGTCTTAGAAAACGCCATCTTCCTCCGTGAGGTTCACCACGCTCAAG 664
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 681 TTGGAATTAATGGCGTCTTAGAAAACGCCATTTTCCTCCGTGAGGTTCACCACGCTCAGG 740
Query 665 AAATCCGTAGGAAGCTTCTTCTTAACCTCATGCTCTCTGAAGTTCCAGGCATATCCGAAG 724
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 741 AGATCCGTAGGAAGCTTCTTCTTAACCTCATGCTCTCTGAAGTTCCAGGCATAGGTGAAG 800
Query 725 ATGAGAAGAAGAGGTTGTTGCATTGTGTTGTGGTTGGAGGTGGGCCAACTGGTGTTGAGT 784
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 801 ATGAGAAGAAGAGGCTGTTGCATTGCGTTGTGGTTGGAGGTGGGCCAACTGGTGTTGAGT 860
Query 785 TTAGTGGTGAATTGAGTGATTTCATCATGAAAGATGTTCGTCAGAGATATTCTCATGTGA 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 TTAGTGGTGAATTGAGTGATTTCATCATGAAAGATGTTCGTCAGAGATATTCTCATGTGA 920
Query 845 AAGATGACATTCGCGTTACTTTGATTGAGGCAAGGGATATACTTTCTTCGTTCGATGATC 904
|||| |||||||| |||||| |||||||||||||||||||||||||||| || || ||||
Sbjct 921 AAGACGACATTCGTGTTACTCTGATTGAGGCAAGGGATATACTTTCTTCTTTTGACGATC 980
Query 905 GGCTAAGGCACTATGCAATCAAGCAGTTAAACAAGTCTGGAGTGAAGCTTGTGCGAGGGA 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 981 GGCTAAGGCACTATGCAATCAAGCAGTTAAACAAGTCTGGAGTGAAGCTTGTGCGTGGGA 1040
Query 965 TTGTGAAAGAAGTGAAGCCTCAGAAGCTAATCCTTGATGATGGTACTGAAGTTCCTTACG 1024
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1041 TTGTGAAAGAAGTGAAGCCTCAGAAGCTAATCCTTGATGATGGCACTGAAGTTCCTTACG 1100
Query 1025 GTCTCTTAGTCTGGTCAACTGGTGTTGGTCCATCTTCATTTGTGAGGTCTCTTGATTTTC 1084
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 GTCCCTTAGTCTGGTCAACTGGTGTTGGTCCATCTTCATTTGTGAGGTCTCTTGATTTTC 1160
Query 1085 CAAAAGATCCAGGTGGAAGGATTGGTATTGATGAGTGGATGCGTGTACCTTCTGTACAAG 1144
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 CTAAAGATCCAGGTGGAAGGATTGGTATTGATGAGTGGATGCGTGTACCTTCTGTACAAG 1220
Query 1145 ACGTGTTTGCAATTGGTGACTGTAGCGGATATCTCGAGAGCACAGGGAAATCAACACTTC 1204
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1221 ACGTGTTTGCAATTGGTGACTGTAGCGGTTATCTCGAGAGCACAGGGAAATCAACACTTC 1280
Query 1205 CTGCTCTTGCACAGGTGGCTGAGAGAGAAGGCAAATACTTGGCAAATCTGTTTAACGTGA 1264
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1281 CTGCACTTGCACAGGTGGCTGAGAGAGAAGGCAAATACTTGGCGAATCTGTTTAACGTGA 1340
Query 1265 TGGGAAAAGCTGGAGGAGGACGAGCCAATAGCGCAAAGGAAATGGAGCTTGGAGAACCAT 1324
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1341 TGGGAAAAGCTGGAGGAGGACGGGCCAATAGCGCAAAGGAAATGGAGCTTGGGGAACCAT 1400
Query 1325 TTGTGTATAAACATTTGGGAAGTATGGCTACTATTGGAAGATACAAAGCTCTTGTTGATC 1384
|||||||||||||| | |||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1401 TTGTGTATAAACATCTCGGAAGTATGGCTACTATTGGGAGATACAAAGCTCTCGTTGATC 1460
Query 1385 TCCGTGAGAGTAAGGAAGGAAAAGGAATATCAATGGCAGGTTTTGTGAGCTGGTTCATAT 1444
|||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1461 TCCGTGAGAGCAAGGAAGGGAAAGGAATATCAATGGCAGGTTTTCTGAGCTGGTTCATAT 1520
Query 1445 GGAGGTCTGCTTATCTGACTCGAGTCGTCAGCTGGAGAAACCGTTTCTATGTTGCTATCA 1504
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1521 GGAGGTCTGCTTATCTGACTCGAGTCGTCAGCTGGAGAAACCGTTTCTACGTTGCTATCA 1580
Query 1505 ATTGGCTCACTACTTTTGTCTTTGGTCGTGACATTAGCCGAATCTGATCCAAATCTCTTC 1564
||||||||||||| |||||||||||||| |||||||||||||||||||||| ||| | ||
Sbjct 1581 ATTGGCTCACTACCTTTGTCTTTGGTCGGGACATTAGCCGAATCTGATCCATATCCCCTC 1640
Query 1565 CACTTCG 1571
|||||||
Sbjct 1641 CACTTCG 1647
> AT2G29990.1 | Symbols: NDA2 | alternative NAD(P)H dehydrogenase
2 | chr2:12793340-12795913 REVERSE LENGTH=1749
Length=1749
Score = 1266 bits (685), Expect = 0.0
Identities = 1140/1359 (84%), Gaps = 34/1359 (3%)
Strand=Plus/Plus
Query 208 GGTTTGGCTCCGACTAAAGAAGGTGAGAAGCCGAGGGTTCTGGTTCTCGGGTCGGGTTGG 267
|||||| | ||||| | |||||| ||||||||||| || ||||||||||||||||||||
Sbjct 184 GGTTTGCCACCGACGAGAGAAGGAGAGAAGCCGAGAGTAGTGGTTCTCGGGTCGGGTTGG 243
Query 268 GCGGGTTGTCGGCTT-ATGAAAGGGATCGATACGAGTATTTACGACGTCGTTTGTGTCTC 326
||||||||||| || ||||||||||||||||||| | | ||||||||||||||||| ||
Sbjct 244 GCGGGTTGTCGA-TTGATGAAAGGGATCGATACGAATCTCTACGACGTCGTTTGTGTTTC 302
Query 327 TCCTAGGAACCACATGGTCTTCACTCCTCT-CTTGGCTTCTACTTGCGTTGGTACCCTTG 385
||| || ||||| ||||| ||||||||||| |||| |||||||||| |||||||| || |
Sbjct 303 TCCGAGAAACCATATGGTTTTCACTCCTCTTCTTG-CTTCTACTTGTGTTGGTACTCTCG 361
Query 386 AGTTTAGGTCCGTTGCTGAACCAATCTCTCGTATCCAACCGGCGATTTC-ACGAGAACCC 444
| |||||||| ||||||||||| ||||| ||||| ||||| |||||||| | |||| ||
Sbjct 362 AATTTAGGTCTGTTGCTGAACCTATCTCACGTATTCAACCTGCGATTTCTA-GAGAGCCT 420
Query 445 GGTTCTTATTACTTCCTCGCTAATTGCTCTAAACTTGATGCTGATAATCATGAGGTGCAT 504
||||||| || ||||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct 421 GGTTCTTTTTTCTTCCTCGCTAATTGCTCTCGTCTTGATGCTGATGCTCATGAGGTTCAT 480
Query 505 TGTGAGACTGTAACTGAAGGCTCT-AGCACATTGAAGCCATGGAAGTTCAAGATAGCTTA 563
||||||||| | ||||| || | | | |||||| |||||||||||||| ||||| |||||
Sbjct 481 TGTGAGACTTTGACTGATGGAT-TGAACACATTAAAGCCATGGAAGTTTAAGATTGCTTA 539
Query 564 CGACAAACTGGT-ACTAGCTTGTGGTGCAGAAGCATCCACATTTGGAATTAATGGCGTCT 622
|| || || || | |||| |||||||||| || || || |||||||| |||| || |
Sbjct 540 TGATAAGCTTGTGA-TAGCAAGTGGTGCAGAGGCTTCTACGTTTGGAATCCATGGTGT-T 597
Query 623 -TAGAAAACGCCATCTTCCTCCGTGAGGTTCACCACGCTCAAGAAATCCGTAGGAAGCTT 681
| ||||| || |||||||| ||||| |||||||| ||||| || || |||||||||||
Sbjct 598 ATGGAAAATGCGATCTTCCTTCGTGAAGTTCACCATGCTCAGGAGATTCGTAGGAAGCTA 657
Query 682 CTTCTT-AACCTCATGCTCTCTGA-AGTTCCAGGCATATCCGAA-GATGAGAAGAAG-AG 737
||| || || || ||||||||||| | | || || ||||| ||| || ||||| ||| ||
Sbjct 658 CTT-TTGAATCTGATGCTCTCTGATACT-CCTGGTATATC-GAAAGAGGAGAA-AAGGAG 713
Query 738 GTTGTTGCATTGTGTTGTGGTTGGAGGTGGGCCAACTGGTGTTGAGTTTAGTGGTGAATT 797
| |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct 714 GCTGTTACATTGTGTTGTGGTTGGTGGTGGACCAACTGGTGTTGAGTTTAGTGGTGAACT 773
Query 798 GAGTGA-TTTCATCATGAAAGATGTTCGTCAGA-GATATTCTCATGTGAAAGATGACATT 855
|||||| ||| || ||||||||||||||||| | ||||| | ||||| || || ||||||
Sbjct 774 GAGTGACTTT-ATTATGAAAGATGTTCGTCA-ACGATATGCCCATGTTAAGGACGACATT 831
Query 856 CGCGTTACTTTGATTGAGGCAAGGGATATACTTTCTTCGTTCGATGATCGGCTAAGGCAC 915
| ||||||||||| ||||| |||||||| ||||| || ||||||||||| || || |
Sbjct 832 CATGTTACTTTGATAGAGGCCAGGGATATTCTTTCATCCTTCGATGATCGTCTCAGACGT 891
Query 916 TATGCAATCAAGCAGTTAAACAAGTCTGGAGTGAAGCTT-GTGCGAGGGATTGTGAAAGA 974
||||| |||||||||||||||||||||||||| | | || ||||||||||||||||||||
Sbjct 892 TATGCTATCAAGCAGTTAAACAAGTCTGGAGT-ACGGTTTGTGCGAGGGATTGTGAAAGA 950
Query 975 AGTGAAGCCTCAGAAGCTAATCCTTGATGATGGTACTGAAGTTCCTTACGGTCTCTTAGT 1034
||| || |||||||| |||| ||||| ||||| || || ||||| ||||| ||||||||
Sbjct 951 TGTGCAGTCTCAGAAGTTAATACTTGACGATGGCACAGAGGTTCCCTACGGACTCTTAGT 1010
Query 1035 CTGGTCAACTGGTGTTGGTCCATCTTCATTT-GTGAGGTCTCTTGATTTTCCAAAAGATC 1093
||||| |||||||||||||| ||| | ||| || |||||||||| | ||||||||||||
Sbjct 1011 GTGGTCCACTGGTGTTGGTCCTTCTCC-TTTCGTTAGGTCTCTTGGTCTTCCAAAAGATC 1069
Query 1094 C-AGGTGGAAGGATTGGTATTGATGAGTGGATGCGTGTACCTTCTGTACAAGACGTGTTT 1152
| | |||||||||||| ||||| || ||||||||||||||||| || ||||||||||||
Sbjct 1070 CTAC-TGGAAGGATTGGCATTGACGAATGGATGCGTGTACCTTCAGTGCAAGACGTGTTT 1128
Query 1153 GCAATTGGTGACTGTAGCGGATATCTCGAGAGCACAGGGAAATCAACACTTCCTGCTCTT 1212
|| ||||||||||| ||||||||||| |||| ||| || ||| | || |||||||||||
Sbjct 1129 GCCATTGGTGACTGCAGCGGATATCTGGAGACCACCGGAAAACCGACTCTTCCTGCTCTA 1188
Query 1213 GCACAGGTGGCTGAGAGAGAAGGCAAATACTTGGCAAATCTGTTTAACGTGAT-GGGAAA 1271
|| ||||| |||||||||||||||||||||||||| ||||| | || | ||| ||||||
Sbjct 1189 GCTCAGGTAGCTGAGAGAGAAGGCAAATACTTGGCGAATCTACTAAATGCGATCGGGAAA 1248
Query 1272 AGCTGGAGGAGGACGAGCCAATAGCGCAAAGGAAATGGAGCTTGGAGAACCATTTGTGTA 1331
|| |||||||||||||| ||||||||||| || || ||||||| || ||||||||
Sbjct 1249 GGCAAT-GGAGGACGAGCCAACAGCGCAAAGGAGATAGAACTTGGAGTTCCCTTTGTGTA 1307
Query 1332 TAAACAT-TTGGGAAGTATGGCTACTATTGGAAGATACAAAGCTCTTGTTGATCTCCGTG 1390
||| || |||| ||| ||||||||||| || |||||||||| || || || || || |
Sbjct 1308 TAAGCACCTTGG-AAGCATGGCTACTATCGGTCGATACAAAGCCCTAGTCGACCTTCGCG 1366
Query 1391 AGAGTAAGGAAGGAAAAGGAATATCAATGGCAGGTTTTGTGAGCTGGTTCATATGGAGGT 1450
|||| ||||| | |||||| ||||||||| | ||||| |||||||||||||||||||| |
Sbjct 1367 AGAGCAAGGACGCAAAAGGGATATCAATGACTGGTTTCGTGAGCTGGTTCATATGGAGAT 1426
Query 1451 CTGCTTATCTGACTCGAGTCGTCAGCTGGAGAAACCGTTTCTATGTTGCTATCAATTGGC 1510
| || || |||||||||||| | |||||||||||||| |||||||| |||||||| |||
Sbjct 1427 CGGCGTACCTGACTCGAGTCATAAGCTGGAGAAACCGATTCTATGTCGCTATCAACTGGT 1486
Query 1511 TCACTACTTTTGTCTTTGGTCGTGACATTAGCCGAATCT 1549
|||| ||||| || |||||||||||||||||||| ||||
Sbjct 1487 TCACCACTTTCGTTTTTGGTCGTGACATTAGCCGTATCT 1525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77559842025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5