BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919445
Length=826
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07210.1 | Symbols: | Ribosomal protein S18 | chr1:2215223-... 1286 0.0
> AT1G07210.1 | Symbols: | Ribosomal protein S18 | chr1:2215223-2216982
FORWARD LENGTH=1197
Length=1197
Score = 1286 bits (696), Expect = 0.0
Identities = 784/827 (95%), Gaps = 3/827 (0%)
Strand=Plus/Plus
Query 1 AAAACCCTAAGTTTCGA-AAGATGAGAATCGCTCGTTTCGCTACTCGTTCCCTCAACGAC 59
||||||||||||||| | |||||||| |||||||||||||||||||| || |||||| ||
Sbjct 78 AAAACCCTAAGTTTC-AGAAGATGAGCATCGCTCGTTTCGCTACTCGGTCACTCAACAAC 136
Query 60 GTAGCGTTCCTCCGACCATTTCGTTCCATCGTCTCTAGAAGCCTCGCCACCAACGCTAAC 119
||| | ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 137 GTAACTTTCCTTCGACCATTTCGTCCCATCGTCTCTAGAAGCCTCGCCACCAACGCCAAC 196
Query 120 GAAGATCCAAACCAGATTCGATCTTCTTTTGACTCATCGGACAATCTCGATTCGTTGTTT 179
|||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||
Sbjct 197 GAAGATCCAAACCAGAATCGATCTTCTTTTGACTCATCGGACAATTTGGATTCGTTGTTT 256
Query 180 GGCGATTACAATGGCAACGATGAGAAAAGCAGTGGTTTCTTCCAGCATCTTAGTAAAGCG 239
|||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 257 GGCGATTACACTGGCAACGATGAGAAAAGCAATGATTTCTTCCAGCATCTTAGTAAAGCG 316
Query 240 GAGAAAGATAAGCGCGACTTCAATGGCTATAATAGATCAGGAGGGTCGAGATATTCCGGT 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 317 GAGAAAGATAAGCGCGATTTCAATGGCTATAATAGATCAGGAGGGTCGAGATACTCCGGT 376
Query 300 GGTGGTTCAATGAACAAGGACGAGAGCTTTGATCCTTCATCTGATGGCGTTGATGGGAAA 359
||||||||||||| ||| ||||||| ||| ||||||||||||||||| |||||||| |||
Sbjct 377 GGTGGTTCAATGAGCAAAGACGAGACCTTCGATCCTTCATCTGATGGTGTTGATGGAAAA 436
Query 360 TTGAAAGAAGCTGCACTATTTTACAATATGGATGAAGGAGATGGCTTGAAGGAGTACTCG 419
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 437 TTGAAAGAAGCTGCACTAGCTTACAATATGGATGAAGGAGATGGCTTTAAGGAGTACTCT 496
Query 420 TTTAGGCCCGATTTCAACAACAGTTGGGGCATTAATAACTTTCCTAGGATGCAGAAACAG 479
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 497 TTTAGGCCCGATTTCAACAACAGTTGGGGCATGAATAACTTCCCTAGGATGCAAAAACAG 556
Query 480 ATGCAAAATCCTAGACAGAATAATAACAAGTCTGAGGTAACTACTGAGGAAGTTCTGAAG 539
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 557 ATGCAAAATCCTAGACAGAATAATAGCAAGTCTGAGGTAACTACTGAGGAAGTTCTGAAG 616
Query 540 AATGCTGATTTCAGGAATGTTAGGTTCCTTGCAAAGTTCATTACCGAAGCTGGGATCATC 599
||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 617 AATGCTGATTTCAGGAATGTTAGGTTCCTTGCAAACTTCATCACTGAAGCTGGGATCATT 676
Query 600 ATTAAGAGGAAGCAGACTGGCATTAGCGCAAAGGCACAAAGAAAGATTGCTAGAGAGATC 659
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 677 ATTAAGAGGAAGCAGACTGGCATTAGCGCAAAGGCTCAAAGAAAGATTGCTAGAGAGATC 736
Query 660 AAAACGGCTCGTGCATTTGGGCTGATGCCTTTCACAACAATGGGTACAAAGGCATTTCAG 719
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 AAAACAGCCCGTGCATTTGGGCTGATGCCTTTCACAACAATGGGTACAAAGGCATTTCAG 796
Query 720 TTTGGGAAAACCATGGAGAACAGAGACCAAGATTTCGAGTATGAAGTGCTTGATGATGAT 779
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 TTCGGGAAAACCATGGAGAACAGAGACCAAGATTTCGAGTATGAAGTGCTTGATGATGAT 856
Query 780 GATGAGTTTGACGAGGGAAATGCTTGAATCTGAAGGTTTGGATCGGG 826
||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 857 GATGAGTTTGACGAGGGAAATGCTTGAATCTGAAG-TTTGGAGCGGG 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40237551747
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5