BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg919445 Length=826 Score E Sequences producing significant alignments: (Bits) Value AT1G07210.1 | Symbols: | Ribosomal protein S18 | chr1:2215223-... 1286 0.0 > AT1G07210.1 | Symbols: | Ribosomal protein S18 | chr1:2215223-2216982 FORWARD LENGTH=1197 Length=1197 Score = 1286 bits (696), Expect = 0.0 Identities = 784/827 (95%), Gaps = 3/827 (0%) Strand=Plus/Plus Query 1 AAAACCCTAAGTTTCGA-AAGATGAGAATCGCTCGTTTCGCTACTCGTTCCCTCAACGAC 59 ||||||||||||||| | |||||||| |||||||||||||||||||| || |||||| || Sbjct 78 AAAACCCTAAGTTTC-AGAAGATGAGCATCGCTCGTTTCGCTACTCGGTCACTCAACAAC 136 Query 60 GTAGCGTTCCTCCGACCATTTCGTTCCATCGTCTCTAGAAGCCTCGCCACCAACGCTAAC 119 ||| | ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 137 GTAACTTTCCTTCGACCATTTCGTCCCATCGTCTCTAGAAGCCTCGCCACCAACGCCAAC 196 Query 120 GAAGATCCAAACCAGATTCGATCTTCTTTTGACTCATCGGACAATCTCGATTCGTTGTTT 179 |||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| Sbjct 197 GAAGATCCAAACCAGAATCGATCTTCTTTTGACTCATCGGACAATTTGGATTCGTTGTTT 256 Query 180 GGCGATTACAATGGCAACGATGAGAAAAGCAGTGGTTTCTTCCAGCATCTTAGTAAAGCG 239 |||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 257 GGCGATTACACTGGCAACGATGAGAAAAGCAATGATTTCTTCCAGCATCTTAGTAAAGCG 316 Query 240 GAGAAAGATAAGCGCGACTTCAATGGCTATAATAGATCAGGAGGGTCGAGATATTCCGGT 299 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 317 GAGAAAGATAAGCGCGATTTCAATGGCTATAATAGATCAGGAGGGTCGAGATACTCCGGT 376 Query 300 GGTGGTTCAATGAACAAGGACGAGAGCTTTGATCCTTCATCTGATGGCGTTGATGGGAAA 359 ||||||||||||| ||| ||||||| ||| ||||||||||||||||| |||||||| ||| Sbjct 377 GGTGGTTCAATGAGCAAAGACGAGACCTTCGATCCTTCATCTGATGGTGTTGATGGAAAA 436 Query 360 TTGAAAGAAGCTGCACTATTTTACAATATGGATGAAGGAGATGGCTTGAAGGAGTACTCG 419 |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 437 TTGAAAGAAGCTGCACTAGCTTACAATATGGATGAAGGAGATGGCTTTAAGGAGTACTCT 496 Query 420 TTTAGGCCCGATTTCAACAACAGTTGGGGCATTAATAACTTTCCTAGGATGCAGAAACAG 479 |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| Sbjct 497 TTTAGGCCCGATTTCAACAACAGTTGGGGCATGAATAACTTCCCTAGGATGCAAAAACAG 556 Query 480 ATGCAAAATCCTAGACAGAATAATAACAAGTCTGAGGTAACTACTGAGGAAGTTCTGAAG 539 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 557 ATGCAAAATCCTAGACAGAATAATAGCAAGTCTGAGGTAACTACTGAGGAAGTTCTGAAG 616 Query 540 AATGCTGATTTCAGGAATGTTAGGTTCCTTGCAAAGTTCATTACCGAAGCTGGGATCATC 599 ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| Sbjct 617 AATGCTGATTTCAGGAATGTTAGGTTCCTTGCAAACTTCATCACTGAAGCTGGGATCATT 676 Query 600 ATTAAGAGGAAGCAGACTGGCATTAGCGCAAAGGCACAAAGAAAGATTGCTAGAGAGATC 659 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 677 ATTAAGAGGAAGCAGACTGGCATTAGCGCAAAGGCTCAAAGAAAGATTGCTAGAGAGATC 736 Query 660 AAAACGGCTCGTGCATTTGGGCTGATGCCTTTCACAACAATGGGTACAAAGGCATTTCAG 719 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 737 AAAACAGCCCGTGCATTTGGGCTGATGCCTTTCACAACAATGGGTACAAAGGCATTTCAG 796 Query 720 TTTGGGAAAACCATGGAGAACAGAGACCAAGATTTCGAGTATGAAGTGCTTGATGATGAT 779 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 797 TTCGGGAAAACCATGGAGAACAGAGACCAAGATTTCGAGTATGAAGTGCTTGATGATGAT 856 Query 780 GATGAGTTTGACGAGGGAAATGCTTGAATCTGAAGGTTTGGATCGGG 826 ||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 857 GATGAGTTTGACGAGGGAAATGCTTGAATCTGAAG-TTTGGAGCGGG 902 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40237551747 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5