BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919446
Length=1567
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07220.1 | Symbols: | Arabidopsis thaliana protein of unkno... 2481 0.0
> AT1G07220.1 | Symbols: | Arabidopsis thaliana protein of unknown
function (DUF821) | chr1:2216925-2219474 REVERSE LENGTH=1767
Length=1767
Score = 2481 bits (1343), Expect = 0.0
Identities = 1494/1567 (95%), Gaps = 9/1567 (1%)
Strand=Plus/Plus
Query 2 AAGAAAAAGCAGAGAAAAAATGGGTCTTCGTCTCCGTCTTCGTCTTCCTCACCACAAAAG 61
||||||||| |||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 77 AAGAAAAAGAAGAGAAAAAATGGGTCTTCGTCTCCGTCTTCGTC-TCC-C-TCACAAAAG 133
Query 62 ctctcctcgtacaccttcttatctccttctatgtgttcttgctctctccttcttctcctt 121
|||||||||| ||||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 134 CTCTCCTCGTTCACCTTCCTATCTCCTTCTCTGTGTTCTTGCTCTATCCTTCTTCTCCTT 193
Query 122 ctccgctcttcttctt-TACAAGGTTGACGACTTTATAGCTCAGACAAAAACTTTGGCCG 180
| ||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 194 CACCGCTCTTCTT-TTCTACAAGGTTGACGACTTTATAGCTCAGACAAAAACTCTGGCCG 252
Query 181 GACATAACTTGGACCCAACACCGTGGCACATCTTCCCTCGCAAATCTTTCAGCGAAGGTA 240
||||||||||||| |||||||||||||| |||||||| |||||||||||||||| || ||
Sbjct 253 GACATAACTTGGAACCAACACCGTGGCATATCTTCCCACGCAAATCTTTCAGCGCAGCTA 312
Query 241 CAAAACATTCTCAGGCTTACCGAATCCTCCAGTGCTCCTACTTCTCATGTCCGTACAACG 300
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 313 CGAAACATTCTCAGGCTTACCGAATCCTCCAGTGCTCCTACTTCTCATGTCCGTACAAAG 372
Query 301 CCGTTGTCCAACCGAAGAGTCTCCAGTCGGAATCTGTGTCGGGTCGTCGAACCCATCAAC 360
|||| |||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||
Sbjct 373 CCGTCGTCCAACCAAAGAGTCTCCACTCGGAATCTGGGTCGGGTCGTCAAACCCATCAAC 432
Query 361 CACAATGCCCAGACTTCTTCAGGTGGATTCACCGGGATTTAGAGCCATGGGCAAAGACTG 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 433 CACAATGCCCAGACTTCTTCAGGTGGATTCACCGGGATTTAGAGCCGTGGGCAAAGACTG 492
Query 421 GGGTCACTAAAGAGCACGTGAAGAGGGCGAAAGCGAATGCTGCGTTTCGAGTGGTGATAC 480
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 493 GGGTGACTAAAGAGCACGTGAAGAGGGCAAAAGCGAATGCTGCGTTTCGAGTGGTGATAC 552
Query 481 TATCAGGGAAGTTGTATGTGGATCTCTATTACGCGTGTGTGCAGAGCAGAATGATGTTCA 540
||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 553 TATCAGGGAAGTTATACGTGGATCTCTATTACGCATGTGTGCAGAGCAGAATGATGTTCA 612
Query 541 CCATTTGGGGGATTCTGCAACTGCTCAACAAGTATCCTGGGATGGTTCCTGATGTCGACA 600
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 613 CCATTTGGGGGATTCTGCAACTGCTCACCAAGTATCCAGGGATGGTTCCTGATGTCGACA 672
Query 601 TGATGTTTGATTGTATGGACAAACCCATCATCAACCAGACCGAGTACCAGTCCTTTCCCG 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 673 TGATGTTTGATTGTATGGACAAACCCATCATCAACCAGACCGAGTACCAGTCCTTTCCTG 732
Query 661 TTCCCCTTTTTCGATATTGCACCAATGAAGCTCATTTGGACATTCCTTTTCCGGATTGGT 720
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 733 TTCCGCTTTTTCGATATTGCACCAACGAAGCTCATTTGGACATTCCTTTTCCGGATTGGT 792
Query 721 CGTTTTGGGGTTGGTCGGAGACAAACCTAAGGCCCTGGGAAGAAGAGTTTGGGGATATAA 780
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 793 CGTTTTGGGGATGGTCGGAGACAAATCTAAGGCCCTGGGAAGAAGAGTTTGGGGATATAA 852
Query 781 AGCAAGGGTCTAGGAGAAGAAGTTGGGACAACAAGCAACCTAGAGCTTACTGGAAAGGCA 840
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 853 AGCAAGGGTCTAGGAGAAGAAGTTGGTACAACAAGCAACCTAGAGCTTACTGGAAAGGCA 912
Query 841 ATCCCGATGTTGTATCGCCTATAAGATTGGAGCTCATGAAATGTAACCATTCACGGTTAT 900
||||||||||||||||||||||| || |||||||||||||||| ||||||||| ||||||
Sbjct 913 ATCCCGATGTTGTATCGCCTATACGACTGGAGCTCATGAAATGCAACCATTCAAGGTTAT 972
Query 901 GGGGAGCACAGATTATGCGCCAGGACTGGGCAGAAGAAGCAAAAGGTGGGTTTGAGCAAT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 GGGGAGCACAGATTATGCGCCAGGACTGGGCAGAAGAAGCAAAAGGTGGGTTTGAGCAAT 1032
Query 961 CCAAGCTTTCCAACCAATGCAATCACCGGTACAAAATATATGCAGAGGGTTATGCGTGGT 1020
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1033 CCAAGCTTTCCAACCAATGCAATCACCGGTACAAAATCTATGCAGAAGGTTATGCGTGGT 1092
Query 1021 CAGTTTCTCTAAAGTATATCCTATCATGTGGTTCCATGACACTCATAATCTCACCTGAGT 1080
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1093 CAGTTTCTCTAAAGTATATCTTATCATGTGGTTCCATGACACTCATAATATCACCTGAGT 1152
Query 1081 ATGAAGATTTCTTCAGCAGAGGCCTCCTTCCCAAGGAAAACTACTGGCCTATCTCTCCCA 1140
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1153 ATGAAGATTTCTTCAGTAGAGGCCTCCTTCCCAAGGAAAATTACTGGCCTATCTCTCCCA 1212
Query 1141 CTGATCTATGTCGGTCCATCAAATACGCTGTTGACTGGGGCAATGCCAACCCCTCTCAAG 1200
|||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |||
Sbjct 1213 CTGATCTATGTCGGTCCATCAAATACGCTGTTGATTGGGGAAATTCCAACCCCTCTGAAG 1272
Query 1201 CTGAAACAATTGGAAAAAGAGGACAAGGTTATATGGAAAGCATTAGCATGGACCGGGTTT 1260
||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||
Sbjct 1273 CTGAAACAATTGGAAAAAGAGGACAGGGTTATATGGAAAGCCTTAGCATGAACCGGGTTT 1332
Query 1261 ATGACTATATGTTTCATCTCATCACTGAGTACTCGAAGCTTCAGAAGTTTAAGCCAGAGA 1320
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1333 ATGACTATATGTTTCATCTCATCACTGAGTACTCGAAACTTCAGAAGTTCAAGCCAGAGA 1392
Query 1321 AGCCGGCTTCGGCTAATGAAGTCTGTGCAGGATCATTGCTCTGC-TTCGCAGAACAAAAA 1379
|||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1393 AGCCGGCTTCCGCTAATGAAGTCTGTGCAGGATCATTGCTCTGCATT-GCAGAACAAAAA 1451
Query 1380 GAGCGGGAACTACTCGAAAGATCCAGAGTCGTACCTTCTCTGGATCAACCATGTAAACTT 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1452 GAGCGGGAACTACTCGAAAGATCCAGAGTCGTACCTTCTCTGGATCAACCATGTAAATTT 1511
Query 1440 CCAGTAGCAGATAGGAGTAGGCTTGAGAGGTTGATCCAACAGAAGAAGAAAACAATCGAA 1499
||||||| |||||||| |||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1512 CCAGTAGAAGATAGGAATAGGCTTGAGTGGTTGATCCAACAGAAGAATAAAACAATCGAA 1571
Query 1500 AATGTTAGATACATGGAGATGACAAGAACAAAAAAGAGTTCCAAATGAATTGTCTTTTCT 1559
|||||||||||||||||||||||||||||| | | | |||| |||||||||||||||| |
Sbjct 1572 AATGTTAGATACATGGAGATGACAAGAACACAGAGGGGTTCTAAATGAATTGTCTTTT-T 1630
Query 1560 AGG-ACA 1565
||| |||
Sbjct 1631 AGGGACA 1637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77359039845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5