BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919447
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07230.1 | Symbols: NPC1 | non-specific phospholipase C1 | c... 1633 0.0
> AT1G07230.1 | Symbols: NPC1 | non-specific phospholipase C1 |
chr1:2220253-2222982 REVERSE LENGTH=2062
Length=2062
Score = 1633 bits (884), Expect = 0.0
Identities = 1011/1071 (94%), Gaps = 13/1071 (1%)
Strand=Plus/Plus
Query 1 GGGTCTAAGGTCACCGG-GAAATGGCTTTCCGGCAAGTATCAACCACTGTAATTCTCTTC 59
||||||||||||||||| ||||||||||||||| ||| | |||||||||||| ||||||
Sbjct 184 GGGTCTAAGGTCACCGGAAAAATGGCTTTCCGGCGAGTGTTAACCACTGTAATCCTCTTC 243
Query 60 TGCTACTTACTAATTTCATCTCAATCTC-TAGAATTC---AA-----A-AAACCCCACAA 109
|||||||||||||||||||||||||| | | |||||| || | |||||||||||
Sbjct 244 TGCTACTTACTAATTTCATCTCAATC-CATTGAATTCAAAAACTCCCAGAAACCCCACAA 302
Query 110 GATCGAAGGACCAATCAAGACTATAGTCGTTGTAGTCATGGAGAATCGCTCTTTCGATCA 169
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 303 GATCCAAGGACCAATCAAGACTATAGTCGTTGTAGTCATGGAGAATCGCTCCTTCGATCA 362
Query 170 CATCCTCGGTTGGCTCAAATCCACCCGACCCGAAATCGACGGATTAACCGGCAAAGAGTC 229
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 363 CATCCTCGGTTGGCTCAAATCGACCCGACCCGAAATCGACGGATTAACCGGCAAAGAGTC 422
Query 230 AAATCCACTCAACGTCTCCGATCCAAATTCCGAAAAGATCTTCGTCTCCGACGACGCCGT 289
|||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 423 AAATCCCCTCAACGTCTCCGATCCAAATTCCAAAAAGATCTTCGTCTCAGACGACGCCGT 482
Query 290 CTTCGTAGACATGGATCCGGGTCATTCATTCCAAGCGATCCGAGAACAGATATTCGGGTC 349
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 483 CTTCGTAGACATGGATCCGGGTCACTCATTCCAAGCGATCCGAGAACAGATATTCGGGTC 542
Query 350 GAACGATACATCCGGCGACCCGATGATGAACGGATTCGCACAGCAATCGGAGAGCATGGA 409
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 543 TAACGATACATCCGGCGACCCGAAAATGAACGGATTCGCACAGCAATCAGAGAGTATGGA 602
Query 410 GCCTGGCATGGCTAAGAACGTGATGAGCGGATTCAAGCCCGAAGTCTTACCTGTTTACAC 469
|||||| |||||||||||||| |||||||| ||||| |||||||||||||| ||||||||
Sbjct 603 GCCTGGAATGGCTAAGAACGTTATGAGCGGGTTCAAACCCGAAGTCTTACCGGTTTACAC 662
Query 470 CGAGTTAGCGAACGAGTTCGGAGTTTTCGATCGCTGGTTCGCGTCAGTACCGACTTCGAC 529
||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 663 CGAGTTAGCGAACGAGTTCGGAGTTTTCGATCGATGGTTCGCTTCAGTACCAACTTCGAC 722
Query 530 TCAACCGAATCGGTTCTACGTTCACTCAGCTACTTCTCATGGATGCTCAAGCAACGTGAA 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 TCAACCGAATCGGTTCTACGTTCACTCAGCTACTTCTCATGGATGCTCAAGCAACGTGAA 782
Query 590 GAAAGATCTCGTTAGAGGGTTTCCTCAAAAGACGATCTTTGATTCGTTAGAAGAGAACGG 649
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 783 GAAAGATCTCGTTAAAGGGTTTCCTCAAAAGACGATCTTTGATTCGTTAGATGAGAACGG 842
Query 650 ACTCAGTTTTGGGATTTATTACCAAAACATCCCTGCTACGTTCTTCTTCAAATCTCTTCG 709
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 843 ACTCAGTTTTGGGATTTATTACCAAAACATCCCTGCGACGTTCTTCTTCAAGTCTCTTCG 902
Query 710 TAGGCTTAAACATTTGGTCAAATTTCATAGCTATGCGCTTAAGTTCAAGCTTGACGCTAA 769
||||||||| |||||||| ||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 903 TAGGCTTAAGCATTTGGTGAAATTCCATAGCTATGCACTTAAGTTCAAGCTCGACGCTAA 962
Query 770 GCTTGGGAAGCTTCCGAATTACTCTGTTGTGGAACAGAGATATTTCGATATCGATCTTTT 829
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 963 GCTTGGGAAGCTTCCGAATTATTCTGTCGTGGAACAGAGATATTTCGATATCGATCTTTT 1022
Query 830 TCCGGCTAATGATGATCATCCGTCGCATGACGTGGCGGCGGGTCAACGTTTTGTTAAGGA 889
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1023 TCCGGCTAATGATGATCATCCGTCGCATGACGTGGCGGCGGGTCAACGGTTTGTTAAGGA 1082
Query 890 AGTCTATGAGACGTTACGGAGCAGCCCACAGTGGAAAGAGATGGCTTTGCTCATAACTTA 949
||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 1083 AGTTTATGAGACGTTACGGAGTAGTCCACAGTGGAAAGAGATGGCTTTGCTCATTACTTA 1142
Query 950 TGATGAACACGGTGGGTTTTATGACCATGTTCCGACGCCGGTTAAAGGTGTGCCTAACCC 1009
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1143 TGATGAGCACGGTGGGTTTTATGACCATGTTCCCACGCCGGTTAAAGGTGTGCCTAACCC 1202
Query 1010 TGATGGAATCATTGGACCT-ACCCGTTTTACTTCGGGTTTGACCGATTGGG 1059
|||||| |||||||||||| | ||||||||||| |||||||||||||||||
Sbjct 1203 TGATGGTATCATTGGACCTGATCCGTTTTACTTTGGGTTTGACCGATTGGG 1253
Score = 874 bits (473), Expect = 0.0
Identities = 504/519 (97%), Gaps = 2/519 (0%)
Strand=Plus/Plus
Query 1058 GGGCACTGTGATACATGAACCTGATGGTCCAACACCACATTCACAGTTTGAGCATTCTTC 1117
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1296 GGGCACTGTGATACATGAACCTGAAGGTCCAACACCACATTCACAATTTGAGCATTCTTC 1355
Query 1118 TATACCC-GCAACGGTGAAGAAACTCTTCAACCTAAAGTCTCACTTCCTGACCAAGAGAG 1176
||| ||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1356 TAT-CCCTGCAACGGTGAAGAAACTCTTCAACCTAAAGTCTCACTTCCTTACAAAGAGAG 1414
Query 1177 ATGCATGGGCTGGTACATTTGAGAAATACTTCCGTATCCGAGATTCTCCTCGCCAAGATT 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 ATGCATGGGCTGGTACATTTGAGAAATACTTCCGTATCCGAGATTCTCCTCGCCAAGATT 1474
Query 1237 GTCCAGAGAAACTGCCGGAAGTGAAACTATCCCTGAGGCCATGGGGAGCAAGAGAAGACT 1296
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1475 GTCCAGAGAAACTGCCGGAAGTGAAACTATCGCTGAGGCCATGGGGAGCAAAAGAAGACT 1534
Query 1297 CAAAGCTCTCAGAATTCCAGGTGGAGCTGATCCAACTGGCCTCTCAACTTGTTGGAGACC 1356
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1535 CAAAGCTCTCAGAATTCCAGGTGGAGCTGATCCAACTGGCCTCTCAACTCGTTGGAGACC 1594
Query 1357 ATCTCCTAAACTCATATCCAGACATTGGGAAGAACATGACAGTAAGTGAAGGCAACAAAT 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1595 ATCTCCTAAACTCATATCCAGACATTGGGAAGAACATGACAGTAAGTGAAGGCAACAAAT 1654
Query 1417 ACGCAGAGGACGCTGTTCAGAAGTTTCTGGAAGCAGGGATGGCTGCACTTGAAGCAGGAG 1476
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1655 ACGCAGAAGACGCTGTTCAGAAGTTTCTGGAAGCAGGGATGGCTGCACTGGAAGCAGGAG 1714
Query 1477 CAGACGAAAACACTATAGTCACTATGAGGCCATCTCTGACGACCAGGACCAATCCCAGTG 1536
||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||
Sbjct 1715 CAGACGAAAACACTATAGTCACTATGAGGCCGTCTCTGACAACCAGGACCAGTCCCAGTG 1774
Query 1537 AAGGGATCAACAAGTATATTGGAAGCTACTGAAATCTAT 1575
|||||| ||||||||||||||||||||||||||||||||
Sbjct 1775 AAGGGACCAACAAGTATATTGGAAGCTACTGAAATCTAT 1813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78413251290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5