BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919454

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G07300.1 | Symbols:  | josephin protein-related | chr1:22457...   737    0.0  


> AT1G07300.1 | Symbols:  | josephin protein-related | chr1:2245758-2246492 
REVERSE LENGTH=735
Length=735

 Score =  737 bits (399),  Expect = 0.0
 Identities = 423/435 (97%), Gaps = 0/435 (0%)
 Strand=Plus/Plus

Query  1    CTCTCTCTATCTTTCTCTTAATATGTCAGCTACTGGTATAAAACGGTCCAACCTAAACAC  60
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct  171  CTCTCTCTATCTTTCTCTTGATATGTCAGCTACTGGTATAAAACGGTCCAACCTCAACAC  230

Query  61   TAGACCGGTTCAGAGAGATGCTTCGGCTAAGCAAACAGCTATCAAGGGACCTTATGGTAA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  231  TAGACCGGTTCAGAGAGATGCTTCGGCTAAGCAAACAGCTATCAAGGGACCTTATGGTAA  290

Query  121  GAGTCCGGGATGCACAACGAGCTGCGGGTTAAGGTTACCGAGGAAAACAGAAGTCACAGC  180
            |||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct  291  GAGTCCGGGATGCACAACAAGCTGCGGATTAAGGTTACCGAGGAAAACAGAAGTGACAGC  350

Query  181  AGCAAAATTGATCAAGCATCTTGGATGCAAATTTGCAAAAGGTTTGCGTCTGGTGGTGAT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  351  AGCAAAATTGATCAAGCATCTTGGATGCAAATTTGCAAAAGGTTTGCGTCTGGTGGTGAT  410

Query  241  GAGGAAGAAGAAAAGATCTCCACCGTCGAAGGTGTCTTCTTTTTCCGGGAGATCTCAGCC  300
            ||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct  411  GAGGAAGAAGAAAAGATCTCCACCGTCGAAGGTTTCTTCTTTTTCTGGGAGGTCTCAGCC  470

Query  301  ACCTATCATCCCAATAAACAATGACAGTCATCGATCAGAGGCCATAGAAGACTGCATACA  360
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  471  ACCAATCATCCCAATAAACAATGACAGTCATCGATCAGAGGCCATAGAAGACTGCATACA  530

Query  361  GTTCATCAACTCATCATCCTCCTTCACCAGATCAAACTCTACTTCTTAAATGTTATCACT  420
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct  531  GTTCATCAACTCATCATCCTCCTTCACCAGATCAAACTCTACTTCTTAAGTGTTATCATT  590

Query  421  CCCAAACCCTTTGTC  435
            |||||||| ||||||
Sbjct  591  CCCAAACCTTTTGTC  605



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20660044839


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5