BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919461
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07370.1 | Symbols: PCNA1, ATPCNA1 | proliferating cellular ... 1363 0.0
> AT1G07370.1 | Symbols: PCNA1, ATPCNA1 | proliferating cellular
nuclear antigen 1 | chr1:2263140-2264551 FORWARD LENGTH=1025
Length=1025
Score = 1363 bits (738), Expect = 0.0
Identities = 803/835 (96%), Gaps = 2/835 (0%)
Strand=Plus/Plus
Query 1 TAATATCTAAAGACGACGAGATGTTGGAGCTACGACTTGTTCAGGGCTCGTTGTTGAAGA 60
|||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 46 TAATATCT-AAGACGACGAAATGTTGGAGCTACGTCTTGTTCAGGGCTCGTTGTTGAAGA 104
Query 61 AGGTTCTAGAATCAATCAAGGATCTGGTGAACGATGCGAATTTCGACTGCTCCAGTACTG 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 105 AGGTTCTAGAATCAATCAAAGATCTGGTGAACGATGCGAATTTCGACTGCTCCAGCACTG 164
Query 121 GCTTCTCGCTGCAAGCTATGGATTCGAGTCACGTGGCGCTGGTGTCTCTCTTGCTAAGAT 180
| ||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 165 GGTTCTCACTCCAAGCTATGGATTCGAGTCACGTTGCTCTGGTGTCTCTCTTGCTAAGAT 224
Query 181 CTGAAGGCTTCGAGCACTACAGATGCGACAGGAATCTCTCCATGGGGATGAATCTCGGCA 240
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 CCGAAGGCTTCGAACACTACAGATGCGACAGGAATCTCTCCATGGGGATGAATCTCGGCA 284
Query 241 ACATGTCCAAGATGCTCAAATGTGCCGGAAATGATGACATCATCACCATCAAGGCTGATG 300
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 285 ACATGTCGAAGATGCTCAAATGCGCCGGAAATGATGACATCATCACCATCAAGGCTGATG 344
Query 301 ACGGCGGCGACACCGTCACCTTCATGTTCGAAAGCCCCACGCAAGACAAGATTGCCGATT 360
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 345 ACGGCGGCGACACCGTTACCTTCATGTTTGAGAGCCCCACGCAAGACAAGATTGCTGATT 404
Query 361 TTGAGATGAAGTTGATGGATATAGACAGTGAACATCTGGGAATACCTGATGCTGAGTACC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 TTGAGATGAAGTTGATGGATATAGACAGTGAACATCTGGGAATACCTGATGCTGAGTACC 464
Query 421 ACTCAATCGTTAGGATGCCTTCGAATGAGTTTTCCAGGATTTGCAAAGATCTCAGTAGCA 480
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 465 ACTCAATCGTGAGGATGCCTTCCAATGAGTTTTCCAGGATTTGCAAAGATCTCAGTAGCA 524
Query 481 TTGGTGATACAGTTGTGATCTCTGTGACTAAAGAAGGGGTGAAGTTTTCCACTGCCGGTG 540
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 525 TTGGTGACACAGTTGTGATCTCTGTGACTAAAGAAGGCGTGAAGTTTTCTACTGCCGGTG 584
Query 541 ATATTGGAACCGCTAACATTGTGCTCAGGCAGAACACAACTGTAGACAAGCCGGAAGATG 600
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 ACATTGGAACCGCTAACATTGTGCTCAGGCAGAACACAACTGTAGACAAGCCGGAAGATG 644
Query 601 CAATTGTGATAGAGATGAAGGAACCAGTGTCACTCTCATTTGCCCTGAGGTACATGAATT 660
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 645 CAATTGTGATAGAGATGAAGGAGCCAGTGTCTCTCTCATTTGCCCTGAGGTACATGAATT 704
Query 661 CCTTCACAAAGGCAACTCCATTGTCAGACACTGTGACAATCAGCTTATCGTCAGAGTTGC 720
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 705 CCTTCACAAAGGCAACTCCATTGTCAGACACAGTGACAATCAGCTTATCGTCGGAGTTGC 764
Query 721 CAGTGGTTGTGGAGTATAAGGTAGCTGAGATGGGTTACATTCGTTACTACTTGGCCCCTA 780
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 765 CAGTGGTTGTGGAGTATAAGGTTGCTGAGATGGGTTACATTCGTTACTACTTGGCTCCTA 824
Query 781 AGATTGAAGAAGAAGAAGACACTAATCCCTAAGACCCCTTTC-TATCCACAATTT 834
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 825 AGATTGAAGAAGAAGAAGACACTAATCCCTAAGACCCCTTTTATATCCACAATTT 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40639424923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5