BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919466
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07420.1 | Symbols: ATSMO2, SMO2-1 | sterol 4-alpha-methyl-o... 1408 0.0
AT2G29390.1 | Symbols: SMO2-2, ATSMO2 | sterol 4-alpha-methyl-o... 715 0.0
> AT1G07420.1 | Symbols: ATSMO2, SMO2-1 | sterol 4-alpha-methyl-oxidase
2-1 | chr1:2277807-2280297 FORWARD LENGTH=1168
Length=1168
Score = 1408 bits (762), Expect = 0.0
Identities = 816/843 (97%), Gaps = 0/843 (0%)
Strand=Plus/Plus
Query 1 TCTGTCTCTCATAGATCCATCTATGGCTTCCCTCGTCGAATCTGGTTGGCAGTACCTTGT 60
||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||
Sbjct 82 TCTGTCTCTCATAGATCCATCCATGGCTTCCTTCGTGGAATCTGGTTGGCAGTACCTTGT 141
Query 61 GACACATTTTAGCGACTTTCAACTGGCCTGCATTGGGAGTTTTCTCCTCCATGAGAGCGT 120
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 142 GACACATTTTAGCGACTTTCAACTGGCATGTATTGGGAGTTTTCTCCTCCATGAAAGCGT 201
Query 121 GTTTTTCTTATCTGGACTCCCTTTCATTTATCTAGAAAGGCAAGGCTTTCTCAGCAAGTA 180
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 202 GTTTTTCTTATCTGGACTCCCTTTCATTTTTCTTGAAAGGCAAGGCTTTCTCAGCAAGTA 261
Query 181 CAAAATTCAGACAAAAAACAACACACCTGCAGCCCAAGGAAAATGTATTACTCGCCTGTT 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 262 CAAAATTCAGACAAAAAATAACACACCTGCAGCCCAAGGAAAATGTATTACTCGCCTGTT 321
Query 241 GCTTTATCATTTCTGCGTAAACTTGCCCTTGATGATGGTCTCCTATCCTGTCTTCAGAGC 300
|||||||||||||| ||||||||||||| ||||| ||| |||||| ||||||||| ||||
Sbjct 322 GCTTTATCATTTCTCCGTAAACTTGCCCCTGATGTTGGCCTCCTACCCTGTCTTCCGAGC 381
Query 301 CATGGGAATGCGAAGCAGTTTTCCTCTACCGTCCTGGAAAGAAGTGTCTGCCCAGATATT 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 382 CATGGGAATGCGAAGCAGTTTTCCTCTGCCGTCCTGGAAAGAAGTGTCTGCCCAGATATT 441
Query 361 ATTCTACTTCATCATTGAGGATTTTGTCTTCTATTGGGGTCATCGGATCTTGCATTCAAA 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 ATTCTACTTTATCATTGAGGATTTTGTCTTCTATTGGGGTCATCGGATCTTGCATTCAAA 501
Query 421 ATGGCTGTACAAGAACGTGCACAGTGTGCATCATGAATATGCCACACCATTTGGTTTGAC 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 502 ATGGCTGTACAAGAACGTGCATAGTGTGCATCATGAATATGCCACACCATTTGGTTTGAC 561
Query 481 ATCAGAATACGCTCACCCCGCTGAGATTCTATTCCTGGGTTTTGCTACCATAGTCGGTCC 540
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 562 ATCAGAATATGCTCACCCCGCTGAGATTCTATTTCTGGGTTTTGCTACCATAGTCGGTCC 621
Query 541 AGCTCTTACTGGCCCTCACCTGATTACTCTCTGGTTATGGATGGTGCTGAGAGTGCTTGA 600
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||
Sbjct 622 AGCTCTTACTGGCCCTCACCTAATTACTCTCTGGTTATGGATGGTGTTGAGAGTGCTGGA 681
Query 601 GACAGTTGAGGCACATTGTGGTTATCATTTCCCATGGAGCCTCTCAAATTTTCTTCCTCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 GACAGTTGAGGCACATTGTGGTTATCATTTCCCATGGAGCCTCTCAAATTTTCTTCCTCT 741
Query 661 GTATGGAGGTGCTGACTTCCATGACTACCATCACCGACTGCTATACACAAAGTCTGGAAA 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 742 GTATGGAGGTGCTGACTTCCATGACTACCATCACCGACTGCTATACACAAAGTCCGGAAA 801
Query 721 CTACTCTTCAACTTTTGTGTATATGGACTGGATCTTTGGTACTGACAAGGGCTACAGAAG 780
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 802 CTACTCTTCAACTTTTGTGTATATGGACTGGATCTTTGGTACTGACAAGGGGTACAGAAG 861
Query 781 ACTGAAGACCCTTAAAGAAAACGGTGACATGAAACAAACGTGAAATTACCAGTTTGGATT 840
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 862 ACTGAAGACCCTTAAAGAAAACGGTGACATGAAACAAACGTGAAATTGCCACTTTGGATT 921
Query 841 GCA 843
|||
Sbjct 922 GCA 924
> AT2G29390.1 | Symbols: SMO2-2, ATSMO2 | sterol 4-alpha-methyl-oxidase
2-2 | chr2:12610543-12612894 REVERSE LENGTH=1129
Length=1129
Score = 715 bits (387), Expect = 0.0
Identities = 562/647 (87%), Gaps = 10/647 (2%)
Strand=Plus/Plus
Query 19 ATCTATGGCTTCCCTCGTCGAATCTGGTTGGCAGTACCTTGTGACACATTTTAGCGACTT 78
||| |||| ||| ||||| ||||| |||||| |||||||||| || ||||| || |||||
Sbjct 92 ATCCATGGATTCTCTCGTTGAATCCGGTTGGAAGTACCTTGTTACGCATTTCAGTGACTT 151
Query 79 TCAACTGGCCTGCATTGGGAGTTTTCTCCTCCATGAGAGCGTGTTTTTCTTATCTGGACT 138
||||||||| || |||||||||||| | || ||||| |||||||||||||| ||||||||
Sbjct 152 TCAACTGGCGTGTATTGGGAGTTTTATACTTCATGAAAGCGTGTTTTTCTTGTCTGGACT 211
Query 139 CCCTTTCATTTAT-CTAGAAAGGCA-AGGCTTTCTCAGCAAGTACAAAATTCAGACAAAA 196
||||| ||||| | ||||||||| | || ||||| ||||| |||||||||||||| |||
Sbjct 212 CCCTTACATTT-TCCTAGAAAGG-ACTGGTTTTCTGAGCAACTACAAAATTCAGACCAAA 269
Query 197 AACAACACACCTGCAGCCCAAGGAAAATGTATTACTCGCCTGTTGCTTTATCATTTCTGC 256
| || || |||| |||||| |||||||| ||| |||| || || ||||| |||| ||||
Sbjct 270 AGTAATACTCCTGAAGCCCAGGGAAAATGCATTGCTCGACTATTACTTTACCATTGCTGC 329
Query 257 GTAAACTTGCCCTTGATGATGGTC-TCCTATCCTGTCTTCAGAGCCATGGGAATGCG-AA 314
|||||||||||| | ||||||| | || |||||||| |||||| |||||| ||| | ||
Sbjct 330 GTAAACTTGCCCCTCATGATGG-CGTCGTATCCTGTATTCAGATTCATGGGCATG-GAAA 387
Query 315 GCAGTTTTCCTCTACCGTCCTGGAAAGAAGTGTCTGCCCAGATATTATTCTACTTCATCA 374
||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 388 GCAGTTTTCCTCTGCCGTCCTGGAAAGTGGTGTCTGCCCAGATCTTATTCTACTTCATCA 447
Query 375 TTGAGGATTTTGTCTTCTATTGGGGTCATC-GGATCTTGCATTCAAAATGGCTGTACAAG 433
||||||||||||| |||||||||||||| | ||||||||||| | |||||||| ||||||
Sbjct 448 TTGAGGATTTTGTATTCTATTGGGGTCA-CAGGATCTTGCATACTAAATGGCTCTACAAG 506
Query 434 AACGTGCACAGTGTGCATCATGAATATGCCACACCATTTGGTTTGACATCAGAATACGCT 493
||||||||||||||||||||||| || || ||||| |||||||||||||||||||| |||
Sbjct 507 AACGTGCACAGTGTGCATCATGAGTACGCGACACCGTTTGGTTTGACATCAGAATATGCT 566
Query 494 CACCCCGCTGAGATTCTATTCCTGGGTTTTGCTACCATAGTCGGTCCAGCTCTTACTGGC 553
|| |||||||| ||||| ||||| |||||||||||||| || ||||| ||||| || ||
Sbjct 567 CATCCCGCTGAAATTCTGTTCCTTGGTTTTGCTACCATTGTTGGTCCGGCTCTCACCGGG 626
Query 554 CCTCACCTGATTACTCTCTGGTTATGGATGGTGCTGAGAGTGCTTGAGACAGTTGAGGCA 613
||||||||||| || || |||||||||||| |||| ||||| |||||||||||||||||
Sbjct 627 CCTCACCTGATCACCCTTTGGTTATGGATGATGCTCAGAGTTATTGAGACAGTTGAGGCA 686
Query 614 CATTGTGGTTATCATTTCCCATGGAGCCTCTCAAATTTTCTTCCTCT 660
|||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 687 CATTGTGGTTATCATTTCCCATGGAGCCCCTCGAATTTTCTTCCTCT 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41091532246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5