BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919473
Length=461
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07476.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 568 2e-161
AT1G07480.1 | Symbols: | Transcription factor IIA, alpha/beta ... 424 5e-118
> AT1G07476.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G07473.1); Has 23 Blast
hits to 23 proteins in 6 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:2295751-2296497 FORWARD
LENGTH=747
Length=747
Score = 568 bits (307), Expect = 2e-161
Identities = 409/457 (89%), Gaps = 11/457 (2%)
Strand=Plus/Plus
Query 3 TTGAGTCTGAATCTCGGTGATGGAAAAGAGTGTTAACACGTTTGGGAAAAGCGAGTCCCC 62
||||||||||||||| |||||||| |||||||| | || |||||||||||||||||||||
Sbjct 166 TTGAGTCTGAATCTC-GTGATGGAGAAGAGTGTCATCATGTTTGGGAAAAGCGAGTCCCC 224
Query 63 AAGATCACCGACTAGGCTGCAGAGGCAAGCTCCCTCAGCTCTGAATCTTGACCGTGTTTC 122
|||| |||||||||||||||||||||||||||| | ||||||||||||| |||||| |
Sbjct 225 GAGATTACCGACTAGGCTGCAGAGGCAAGCTCCCGCGGCTCTGAATCTTGGTCGTGTTCC 284
Query 123 CGAGAATCCCTTTGTGCAGCAGTCTTGTGATGCA-GTTGCAGGTGCAGCTATTCCTCTGC 181
||||||||||||| ||||||||||| |||||| | |||||||||||| ||||||||||||
Sbjct 285 CGAGAATCCCTTTCTGCAGCAGTCTGGTGATG-AGGTTGCAGGTGCACCTATTCCTCTGC 343
Query 182 TTTCACCTCTCTTTGTCTCTCCAAATTCGCACTCTTCTCACT-CTAAAGAAGGGCACA-C 239
|||||||||||||||| |||||||||||||||||||||| | ||| ||||||||| |
Sbjct 344 TTTCACCTCTCTTTGTGTCTCCAAATTCGCACTCTTCTC-TTCCTAGAGAAGGGCA-AGT 401
Query 240 AAATCCAAATC-CACACGCTTCTCCCTCTAGAGAAGGGCACGATTTTACGTTTCGGGCGG 298
||||||||| | | || ||||||||| ||||||||||||||||||||||||||| || |
Sbjct 402 AAATCCAAA-CTCGCAAGCTTCTCCCACTAGAGAAGGGCACGATTTTACGTTTCCGGTGA 460
Query 299 GTAATAGTGAGAAGAACGGATCTCAGCCTTCAATGGACCACAAGGA-AGGGTGGCAGCAT 357
|| || ||| ||||| |||||||||||||| ||||||||||| | || |||||| |||
Sbjct 461 GTCTTACTGAAAAGAAAGGATCTCAGCCTTCGATGGACCACAA-AATAGAGTGGCAACAT 519
Query 358 TCGGCTAAGGTCGACCATAGTGACCAGATGAGTCTCTTGAATATGTTTCAGACCAAGTTC 417
|||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 520 TCGGCTAAGGGCGACCACAGTGACCAGATGAGTCTCTTAAATATGTTTCAGACCAAGTTC 579
Query 418 CTGCTTGTAGATCATTCACAGTGAGGGTTTTAGCATT 454
||||||||||||||| |||||||||||||||||||||
Sbjct 580 CTGCTTGTAGATCATCCACAGTGAGGGTTTTAGCATT 616
> AT1G07480.1 | Symbols: | Transcription factor IIA, alpha/beta
subunit | chr1:2296023-2299470 REVERSE LENGTH=1972
Length=1972
Score = 424 bits (229), Expect = 5e-118
Identities = 308/345 (89%), Gaps = 10/345 (3%)
Strand=Plus/Minus
Query 115 CGTGTTTCCGAGAATCCCTTTGTGCAGCAGTCTTGTGATGCA-GTTGCAGGTGCAGCTAT 173
|||||| |||||||||||||| ||||||||||| |||||| | |||||||||||| ||||
Sbjct 1968 CGTGTTCCCGAGAATCCCTTTCTGCAGCAGTCTGGTGATG-AGGTTGCAGGTGCACCTAT 1910
Query 174 TCCTCTGCTTTCACCTCTCTTTGTCTCTCCAAATTCGCACTCTTCTCACT-CTAAAGAAG 232
|||||||||||||||||||||||| |||||||||||||||||||||| | ||| |||||
Sbjct 1909 TCCTCTGCTTTCACCTCTCTTTGTGTCTCCAAATTCGCACTCTTCTC-TTCCTAGAGAAG 1851
Query 233 GGCACA-CAAATCCAAATC-CACACGCTTCTCCCTCTAGAGAAGGGCACGATTTTACGTT 290
|||| | ||||||||| | | || ||||||||| |||||||||||||||||||||||||
Sbjct 1850 GGCA-AGTAAATCCAAA-CTCGCAAGCTTCTCCCACTAGAGAAGGGCACGATTTTACGTT 1793
Query 291 TCGGGCGGGTAATAGTGAGAAGAACGGATCTCAGCCTTCAATGGACCACAAGGA-AGGGT 349
|| || | || || ||| ||||| |||||||||||||| ||||||||||| | || ||
Sbjct 1792 TCCGGTGAGTCTTACTGAAAAGAAAGGATCTCAGCCTTCGATGGACCACAA-AATAGAGT 1734
Query 350 GGCAGCATTCGGCTAAGGTCGACCATAGTGACCAGATGAGTCTCTTGAATATGTTTCAGA 409
|||| ||||||||||||| |||||| |||||||||||||||||||| |||||||||||||
Sbjct 1733 GGCAACATTCGGCTAAGGGCGACCACAGTGACCAGATGAGTCTCTTAAATATGTTTCAGA 1674
Query 410 CCAAGTTCCTGCTTGTAGATCATTCACAGTGAGGGTTTTAGCATT 454
||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1673 CCAAGTTCCTGCTTGTAGATCATCCACAGTGAGGGTTTTAGCATT 1629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21967006313
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5