BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg919473 Length=461 Score E Sequences producing significant alignments: (Bits) Value AT1G07476.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 568 2e-161 AT1G07480.1 | Symbols: | Transcription factor IIA, alpha/beta ... 424 5e-118 > AT1G07476.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07473.1); Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:2295751-2296497 FORWARD LENGTH=747 Length=747 Score = 568 bits (307), Expect = 2e-161 Identities = 409/457 (89%), Gaps = 11/457 (2%) Strand=Plus/Plus Query 3 TTGAGTCTGAATCTCGGTGATGGAAAAGAGTGTTAACACGTTTGGGAAAAGCGAGTCCCC 62 ||||||||||||||| |||||||| |||||||| | || ||||||||||||||||||||| Sbjct 166 TTGAGTCTGAATCTC-GTGATGGAGAAGAGTGTCATCATGTTTGGGAAAAGCGAGTCCCC 224 Query 63 AAGATCACCGACTAGGCTGCAGAGGCAAGCTCCCTCAGCTCTGAATCTTGACCGTGTTTC 122 |||| |||||||||||||||||||||||||||| | ||||||||||||| |||||| | Sbjct 225 GAGATTACCGACTAGGCTGCAGAGGCAAGCTCCCGCGGCTCTGAATCTTGGTCGTGTTCC 284 Query 123 CGAGAATCCCTTTGTGCAGCAGTCTTGTGATGCA-GTTGCAGGTGCAGCTATTCCTCTGC 181 ||||||||||||| ||||||||||| |||||| | |||||||||||| |||||||||||| Sbjct 285 CGAGAATCCCTTTCTGCAGCAGTCTGGTGATG-AGGTTGCAGGTGCACCTATTCCTCTGC 343 Query 182 TTTCACCTCTCTTTGTCTCTCCAAATTCGCACTCTTCTCACT-CTAAAGAAGGGCACA-C 239 |||||||||||||||| |||||||||||||||||||||| | ||| ||||||||| | Sbjct 344 TTTCACCTCTCTTTGTGTCTCCAAATTCGCACTCTTCTC-TTCCTAGAGAAGGGCA-AGT 401 Query 240 AAATCCAAATC-CACACGCTTCTCCCTCTAGAGAAGGGCACGATTTTACGTTTCGGGCGG 298 ||||||||| | | || ||||||||| ||||||||||||||||||||||||||| || | Sbjct 402 AAATCCAAA-CTCGCAAGCTTCTCCCACTAGAGAAGGGCACGATTTTACGTTTCCGGTGA 460 Query 299 GTAATAGTGAGAAGAACGGATCTCAGCCTTCAATGGACCACAAGGA-AGGGTGGCAGCAT 357 || || ||| ||||| |||||||||||||| ||||||||||| | || |||||| ||| Sbjct 461 GTCTTACTGAAAAGAAAGGATCTCAGCCTTCGATGGACCACAA-AATAGAGTGGCAACAT 519 Query 358 TCGGCTAAGGTCGACCATAGTGACCAGATGAGTCTCTTGAATATGTTTCAGACCAAGTTC 417 |||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 520 TCGGCTAAGGGCGACCACAGTGACCAGATGAGTCTCTTAAATATGTTTCAGACCAAGTTC 579 Query 418 CTGCTTGTAGATCATTCACAGTGAGGGTTTTAGCATT 454 ||||||||||||||| ||||||||||||||||||||| Sbjct 580 CTGCTTGTAGATCATCCACAGTGAGGGTTTTAGCATT 616 > AT1G07480.1 | Symbols: | Transcription factor IIA, alpha/beta subunit | chr1:2296023-2299470 REVERSE LENGTH=1972 Length=1972 Score = 424 bits (229), Expect = 5e-118 Identities = 308/345 (89%), Gaps = 10/345 (3%) Strand=Plus/Minus Query 115 CGTGTTTCCGAGAATCCCTTTGTGCAGCAGTCTTGTGATGCA-GTTGCAGGTGCAGCTAT 173 |||||| |||||||||||||| ||||||||||| |||||| | |||||||||||| |||| Sbjct 1968 CGTGTTCCCGAGAATCCCTTTCTGCAGCAGTCTGGTGATG-AGGTTGCAGGTGCACCTAT 1910 Query 174 TCCTCTGCTTTCACCTCTCTTTGTCTCTCCAAATTCGCACTCTTCTCACT-CTAAAGAAG 232 |||||||||||||||||||||||| |||||||||||||||||||||| | ||| ||||| Sbjct 1909 TCCTCTGCTTTCACCTCTCTTTGTGTCTCCAAATTCGCACTCTTCTC-TTCCTAGAGAAG 1851 Query 233 GGCACA-CAAATCCAAATC-CACACGCTTCTCCCTCTAGAGAAGGGCACGATTTTACGTT 290 |||| | ||||||||| | | || ||||||||| ||||||||||||||||||||||||| Sbjct 1850 GGCA-AGTAAATCCAAA-CTCGCAAGCTTCTCCCACTAGAGAAGGGCACGATTTTACGTT 1793 Query 291 TCGGGCGGGTAATAGTGAGAAGAACGGATCTCAGCCTTCAATGGACCACAAGGA-AGGGT 349 || || | || || ||| ||||| |||||||||||||| ||||||||||| | || || Sbjct 1792 TCCGGTGAGTCTTACTGAAAAGAAAGGATCTCAGCCTTCGATGGACCACAA-AATAGAGT 1734 Query 350 GGCAGCATTCGGCTAAGGTCGACCATAGTGACCAGATGAGTCTCTTGAATATGTTTCAGA 409 |||| ||||||||||||| |||||| |||||||||||||||||||| ||||||||||||| Sbjct 1733 GGCAACATTCGGCTAAGGGCGACCACAGTGACCAGATGAGTCTCTTAAATATGTTTCAGA 1674 Query 410 CCAAGTTCCTGCTTGTAGATCATTCACAGTGAGGGTTTTAGCATT 454 ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1673 CCAAGTTCCTGCTTGTAGATCATCCACAGTGAGGGTTTTAGCATT 1629 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21967006313 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5