BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919476

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G07500.1 | Symbols:  | unknown protein; Has 4 Blast hits to ...   158    4e-38


> AT1G07500.1 | Symbols:  | unknown protein; Has 4 Blast hits to 
4 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 
0 (source: NCBI BLink). | chr1:2304766-2305031 REVERSE LENGTH=225
Length=225

 Score =  158 bits (85),  Expect = 4e-38
 Identities = 94/98 (96%), Gaps = 1/98 (1%)
 Strand=Plus/Plus

Query  178  GGGAACCACCGAAGAAGGGATATTTTCAGCCACCGGATCTAGACTTGTTCTTCTCGGTGG  237
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  123  GGGAACCACCGAAGAAGGGATATTTTCAGCCGCCGGATCTAGACTTGTTCTTCTCGGTGG  182

Query  238  TGGCAGCCTCCAAA-CGGCAACCTAGTTGCGCTTAGAT  274
            | ||||||||| || |||||||||||||||||||||||
Sbjct  183  TAGCAGCCTCCCAAGCGGCAACCTAGTTGCGCTTAGAT  220



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13572292230


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5