BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919481

Length=893
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G07550.1 | Symbols:  | Leucine-rich repeat protein kinase fa...   584    4e-166


> AT1G07550.1 | Symbols:  | Leucine-rich repeat protein kinase 
family protein | chr1:2322653-2326561 REVERSE LENGTH=2700
Length=2700

 Score =  584 bits (316),  Expect = 4e-166
 Identities = 377/406 (93%), Gaps = 6/406 (1%)
 Strand=Plus/Plus

Query  128   GTTATCCCCAAGATGTGCATGATAGAATTTGGATGCTGTCGATATTACCAGAATGGACGC  187
             |||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||
Sbjct  669   GTTATCCCCAAGATGTGCATGATAGAATTTGGGTGCCGTTGATATTACCAGAATGGACGC  728

Query  188   ATATAAACACAACCCACCACGTTATTGATTCTATAGGTGGCTATGACCCACCACAAGATG  247
             ||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  729   ATATAAACACAAGTCACCACGTTATTGATTCTATAGATGGCTATGACCCACCACAAGATG  788

Query  248   TACTTAGGACCGGCGCCATGCCGGCTAATGCCAGTGATCCAATGACCATTACCTGGAGTT  307
             |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct  789   TACTTAGGACCGGCGCCATGCCCGCTAATGCCAGTGATCCAATGACCATTACCTGGAATT  848

Query  308   TGGAGACGGCTACTGACCAAGTTTATGGTTATATTTACA-CGGCTGAGATCACGAAAGTC  366
             || |||||||||||||||| ||||| ||||||||||||| || | ||||||| | |||||
Sbjct  849   TGAAGACGGCTACTGACCAGGTTTACGGTTATATTTACATCGCC-GAGATCATGGAAGTC  907

Query  367   CCGGCCAATGAAACTAGAGAATTCGAAGTTGTGGCAAATGATAAAGTTCATTTCGATCCG  426
             | |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| 
Sbjct  908   CAGGCCAATGAAACTAGAGAATTCGAAGTTGTGGTAAATAATAAAGTTCATTTCGATCCT  967

Query  427   TTCAGTCCTACCA-AGTTTGAAGCACAGATTT-TGTTCAACGATGTACCACTGACATGCG  484
             ||| ||||||||| | ||||||||||| | || |||||||| ||||||||||||||||||
Sbjct  968   TTCCGTCCTACCAGA-TTTGAAGCACA-AGTTATGTTCAACAATGTACCACTGACATGCG  1025

Query  485   AGGGAGGATTTTGTCGTGTGCAACTTATAAAAACTCCGAGATCGAC  530
             ||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct  1026  AGGGAGGATTTTGTCGTCTGCAACTTATAAAAACTCCGAAATCGAC  1071


 Score =  440 bits (238),  Expect = 1e-122
 Identities = 248/253 (98%), Gaps = 0/253 (0%)
 Strand=Plus/Plus

Query  531   AGATTTGTCTTCAAGTGGATTAAATGGAGTTATATCACCTAGCATACAAAATCTAACTCA  590
             |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  1294  AGATTTGTCTTCAAGTGGATTAAATGGAGTTATACCACCTAGCATACAAAATCTAACTCA  1353

Query  591   ACTTCAAGAACTGGACTTGTCCCAAAACAACTTGACTGGTGAAGTGCCTGAATTTCTAGC  650
             |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct  1354  ACTTCAAGAACTGGACCTGTCCCAAAACAACTTGACTGGTAAAGTGCCTGAATTTCTAGC  1413

Query  651   CAAGATGAAGTCTTTGTTGGTCATAAACTTAAGTGGAAACAAACTTAGCGGTTTGGTTCC  710
             ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1414  CAAGATGAAATATTTGTTGGTCATAAACTTAAGTGGAAACAAACTTAGCGGTTTGGTTCC  1473

Query  711   TCAAGCCCTTCTTGATAGAAAAAAGGAAGGATTAAAGCTATTGGTTGACGAAAATATGAT  770
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1474  TCAAGCCCTTCTTGATAGAAAAAAGGAAGGATTAAAGCTATTGGTTGACGAAAATATGAT  1533

Query  771   TTGTGTGTCTTGC  783
             |||||||||||||
Sbjct  1534  TTGTGTGTCTTGC  1546


 Score =  152 bits (82),  Expect = 5e-36
 Identities = 96/103 (93%), Gaps = 0/103 (0%)
 Strand=Plus/Plus

Query  1    TGAACCCAGAAATCATCAAAAATGGAGACTCACACCAAGCTTCTGTTTGCTGCGTGTGCC  60
            |||||  ||||||||||||||||||| |||  ||||| ||||||||||||||||||||||
Sbjct  29   TGAACGAAGAAATCATCAAAAATGGACACTTGCACCAGGCTTCTGTTTGCTGCGTGTGCC  88

Query  61   ACTTTATCCATCATACATCTTGTTCAATCTCAGAATCAACAAG  103
            |||||||||||| ||||||||||||||||||||||||||||||
Sbjct  89   ACTTTATCCATCTTACATCTTGTTCAATCTCAGAATCAACAAG  131


 Score =  115 bits (62),  Expect = 7e-25
 Identities = 68/71 (96%), Gaps = 0/71 (0%)
 Strand=Plus/Plus

Query  782   GCCATTATCATACTTGTGTTAGTTCTCATATTTGTTATAAGAAAGAGAAAGCCATCTGCT  841
             |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct  1595  GCCATTATCATACTTGTGTTAGTTCTCATATTTGTTTTAAGAAGGAGAAAGCCATCTGCT  1654

Query  842   GGGAAAGGTAC  852
             ||||||| |||
Sbjct  1655  GGGAAAGTTAC  1665



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 43603239596


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5