BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg919481 Length=893 Score E Sequences producing significant alignments: (Bits) Value AT1G07550.1 | Symbols: | Leucine-rich repeat protein kinase fa... 584 4e-166 > AT1G07550.1 | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:2322653-2326561 REVERSE LENGTH=2700 Length=2700 Score = 584 bits (316), Expect = 4e-166 Identities = 377/406 (93%), Gaps = 6/406 (1%) Strand=Plus/Plus Query 128 GTTATCCCCAAGATGTGCATGATAGAATTTGGATGCTGTCGATATTACCAGAATGGACGC 187 |||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||| Sbjct 669 GTTATCCCCAAGATGTGCATGATAGAATTTGGGTGCCGTTGATATTACCAGAATGGACGC 728 Query 188 ATATAAACACAACCCACCACGTTATTGATTCTATAGGTGGCTATGACCCACCACAAGATG 247 |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 729 ATATAAACACAAGTCACCACGTTATTGATTCTATAGATGGCTATGACCCACCACAAGATG 788 Query 248 TACTTAGGACCGGCGCCATGCCGGCTAATGCCAGTGATCCAATGACCATTACCTGGAGTT 307 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || Sbjct 789 TACTTAGGACCGGCGCCATGCCCGCTAATGCCAGTGATCCAATGACCATTACCTGGAATT 848 Query 308 TGGAGACGGCTACTGACCAAGTTTATGGTTATATTTACA-CGGCTGAGATCACGAAAGTC 366 || |||||||||||||||| ||||| ||||||||||||| || | ||||||| | ||||| Sbjct 849 TGAAGACGGCTACTGACCAGGTTTACGGTTATATTTACATCGCC-GAGATCATGGAAGTC 907 Query 367 CCGGCCAATGAAACTAGAGAATTCGAAGTTGTGGCAAATGATAAAGTTCATTTCGATCCG 426 | |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 908 CAGGCCAATGAAACTAGAGAATTCGAAGTTGTGGTAAATAATAAAGTTCATTTCGATCCT 967 Query 427 TTCAGTCCTACCA-AGTTTGAAGCACAGATTT-TGTTCAACGATGTACCACTGACATGCG 484 ||| ||||||||| | ||||||||||| | || |||||||| |||||||||||||||||| Sbjct 968 TTCCGTCCTACCAGA-TTTGAAGCACA-AGTTATGTTCAACAATGTACCACTGACATGCG 1025 Query 485 AGGGAGGATTTTGTCGTGTGCAACTTATAAAAACTCCGAGATCGAC 530 ||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 1026 AGGGAGGATTTTGTCGTCTGCAACTTATAAAAACTCCGAAATCGAC 1071 Score = 440 bits (238), Expect = 1e-122 Identities = 248/253 (98%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 531 AGATTTGTCTTCAAGTGGATTAAATGGAGTTATATCACCTAGCATACAAAATCTAACTCA 590 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1294 AGATTTGTCTTCAAGTGGATTAAATGGAGTTATACCACCTAGCATACAAAATCTAACTCA 1353 Query 591 ACTTCAAGAACTGGACTTGTCCCAAAACAACTTGACTGGTGAAGTGCCTGAATTTCTAGC 650 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1354 ACTTCAAGAACTGGACCTGTCCCAAAACAACTTGACTGGTAAAGTGCCTGAATTTCTAGC 1413 Query 651 CAAGATGAAGTCTTTGTTGGTCATAAACTTAAGTGGAAACAAACTTAGCGGTTTGGTTCC 710 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1414 CAAGATGAAATATTTGTTGGTCATAAACTTAAGTGGAAACAAACTTAGCGGTTTGGTTCC 1473 Query 711 TCAAGCCCTTCTTGATAGAAAAAAGGAAGGATTAAAGCTATTGGTTGACGAAAATATGAT 770 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1474 TCAAGCCCTTCTTGATAGAAAAAAGGAAGGATTAAAGCTATTGGTTGACGAAAATATGAT 1533 Query 771 TTGTGTGTCTTGC 783 ||||||||||||| Sbjct 1534 TTGTGTGTCTTGC 1546 Score = 152 bits (82), Expect = 5e-36 Identities = 96/103 (93%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1 TGAACCCAGAAATCATCAAAAATGGAGACTCACACCAAGCTTCTGTTTGCTGCGTGTGCC 60 ||||| ||||||||||||||||||| ||| ||||| |||||||||||||||||||||| Sbjct 29 TGAACGAAGAAATCATCAAAAATGGACACTTGCACCAGGCTTCTGTTTGCTGCGTGTGCC 88 Query 61 ACTTTATCCATCATACATCTTGTTCAATCTCAGAATCAACAAG 103 |||||||||||| |||||||||||||||||||||||||||||| Sbjct 89 ACTTTATCCATCTTACATCTTGTTCAATCTCAGAATCAACAAG 131 Score = 115 bits (62), Expect = 7e-25 Identities = 68/71 (96%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 782 GCCATTATCATACTTGTGTTAGTTCTCATATTTGTTATAAGAAAGAGAAAGCCATCTGCT 841 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 1595 GCCATTATCATACTTGTGTTAGTTCTCATATTTGTTTTAAGAAGGAGAAAGCCATCTGCT 1654 Query 842 GGGAAAGGTAC 852 ||||||| ||| Sbjct 1655 GGGAAAGTTAC 1665 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43603239596 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5