BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919498
Length=1888
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07705.2 | Symbols: | NOT2 / NOT3 / NOT5 family | chr1:2381... 3157 0.0
AT1G07702.1 | Symbols: | snoRNA | chr1:2382251-2382331 REVERSE... 128 2e-28
> AT1G07705.2 | Symbols: | NOT2 / NOT3 / NOT5 family | chr1:2381615-2386092
FORWARD LENGTH=2316
Length=2316
Score = 3157 bits (1709), Expect = 0.0
Identities = 1825/1882 (97%), Gaps = 3/1882 (0%)
Strand=Plus/Plus
Query 1 GAGTTGAATAATATCTGCAAATGTCAAGTTTACTTAATTCCTCAATAAACGGGTCTACCT 60
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 GAGTTGATTAATCTCTGCAAATGTCAAGTTTACTTAATTCCTCAATAAACGGGTCTACCT 275
Query 61 CGAATTTGTCAGACGGTTCAGGGAGAACGTTTACTTCTTCTTTCTCCGGTCAGTCTGGGG 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 276 CGAATTTGTCAGACGGTTCAGGGAGGACGTTTACTTCTTCTTTCTCCGGTCAGTCTGGGG 335
Query 121 CAGCTTCTCCAGCTTTCCATCATGCTGGATCTATTCAGGGCCTTCATAATATTCATGGAA 180
|||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 CAGCGTCTCCAGTTTTTCATCATGCTGGATCTATTCAGGGCCTTCATAATATTCATGGAA 395
Query 181 ACTTTAATGTTCCCAACTTGGCGGGAAGTCTTGGATCAAGAAATTCAAGTCTAAACGGTG 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 396 ACTTTAATGTTCCCAACTTGGCGGGAAGTCTTGGATCGAGAAATTCAAGTCTAAATGGTG 455
Query 241 TTCCTTCTGCTGGTGTCCAACAACAAAATGGAAGTATTTCGAATGGAAGATTTGCATCCA 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 TTCCATCTGCTGGTGTCCAACAACAAAATGGAAGTATTTCGAATGGAAGATTTGCATCCA 515
Query 301 GTAATATTCCGGTTGCACTCTCTCAGATATCTCATGGTAGCTCCCATGGACACTCAGGAC 360
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 516 GCAATATTCCGGTTGCACTCTCTCAGATGTCTCATGGTAGCTCCCATGGACACTCAGGAC 575
Query 361 TCACTAATAGGGGAGGATTGGGAGTTTCTCCAATTTTGGGAAATGCAGGTTCTCGAATGA 420
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 576 TCACTAATAGGGGAGGATTGGGAGTTTCTCCAATATTGGGAAATGTAGGTTCTCGAATGA 635
Query 421 CAAGTTCTATGGGGAATATGGTTGGTGGAGGCACAATGGGTAGGACTTTGAGCTCTGGTG 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 CGAGTTCTATGGGGAATATGGTTGGTGGAGGCACAATGGGTAGGACTTTGAGCTCTGGTG 695
Query 481 GAGGATTATCGATTCCGAGTCTTGGTTCGCGGCTAAATCTGGCAGTAAATAGCGGATCCG 540
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 696 GAGGATTGTCGATTCCGAGTCTTGGTTCGCGGCTAAATTTGGCAGTAAATAGCGGATCCG 755
Query 541 GAAATATTGGACAAAATCGCATGATGGGTGGGGTCTTGCCACAAGGATCTCCGCAGGTTC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 GAAATATTGGACAAAATCGCATGATGGGTGGGGTCTTGCCACAAGGATCTCCGCAGGTTC 815
Query 601 TTTCGATGCTAGGAAATTCTTACCCTTCAGCTGGAGGACTTTCCCAAAATCATGTTCAAG 660
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 TTTCGATGCTGGGAAATTCTTACCCTTCAGCTGGAGGACTTTCCCAAAATCATGTTCAAG 875
Query 661 CAATGAACAGTCTAAGCTCTATGGGGTTGCTGAATGATATGAACTCCAACGACACTTCTC 720
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 876 CAATGAACAGTCTAAGCTCTATGGGTTTGCTGAATGATATGAACTCCAACGACACTTCTC 935
Query 721 CGTTTGATATTAATAATGATTTTCCTCAGCTCACAAGCCGCCCCACCTCTGCCGGCGGTC 780
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||
Sbjct 936 CGTTTGATATTAATAATGATTTTCCTCAGCTCACAAGCCGCCCCAGCTCTGCGGGCAGTC 995
Query 781 AAGGACAATTGGGGTCTCGATTGAAACAAGGCCTTGGAATCAGCCCTATAGTTCAGCAAA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 AAGGACAATTGGGGTCTCGATTGAAACAAGGCCTTGGAATCAGCCCTATAGTTCAGCAAA 1055
Query 841 ACCAAGAGTTCAGCATCCAAAATGAAGATTTTCCAGCATTGCCAGGATATAAAGGTAGTA 900
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1056 ACCAAGAGTTCAGCATCCAAAATGAAGATTTTCCAGCATTGCCAGGATACAAAGGTAGTA 1115
Query 901 ATGCTGATTATCCAATGGATTTGCATCATAAAGAACAACTCCATGAGAACTCAGTTTTAA 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 GTGCTGATTATCCAATGGATTTGCATCATAAAGAACAACTCCATGAGAACTCAGTTTTAA 1175
Query 961 TGATGCAATCTCAACAATTATCTATGGGAAGGTCTGGTGGGTTTAACTTAGGTGGACCAT 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1176 TGATGCAATCTCAACAATTATCTATGGGAAGGTCTGGTGGGTTTAACTTAGGTGGAGCAT 1235
Query 1021 ATACATCACACCGTCCTCAACAACAGCAACAACATGCTCAAGCTGTGAGTAGTAGTGGTA 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 ATACATCACACCGTCCTCAACAACAGCAACAACATGCTCAAGCTGTGAGTAGTAGTGGTG 1295
Query 1081 TTTCCTTACATGGGTCTGACATCTTCTCATCTTCGCATCCGTCGTACCACTCGCAGACTG 1140
||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||
Sbjct 1296 TTTCCTTACATGGGTCTGACATCTTCTCATCTTCGCATCCGCCTTACCACTCACAGACTG 1355
Query 1141 GTGGACCTCCGGGTATTGGATTAAGATCTATGAATTCTGCAAATTCTGTCACTGGGATGG 1200
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1356 GTGGAGCTCCGGGTATTGGATTAAGATCTATGAATTCTGCAAATTCTATCACTGGGATGG 1415
Query 1201 GTACTTATGACCAGCAGCTCATCCAGCAATATCAGCAACAACAGAACACATCCCAGTATC 1260
|| | ||||||||||||||||||||||||||||||| ||||||||| || |||||||||
Sbjct 1416 GT--T-ATGACCAGCAGCTCATCCAGCAATATCAGCACCAACAGAACTCAGCCCAGTATC 1472
Query 1261 GCTTGCAGCAGATGTCAGCTGTTAGCCAACCTTTCAGAGATGGGGGATTAAAACCAATGC 1320
||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||
Sbjct 1473 GCTTGCAGCAGATGTCAGCTGCTAGCCAACCTTTCAGAGATGTAGGATTAAAATCAATGC 1532
Query 1321 AGGCGACACAGTCAAATCCTGATCGGTTTGGCTTGCTTGGTTTGCTCAGTGTGATAAAGT 1380
| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1533 AATCGACACAGTCAAATCCTGATCGGTTTGGCTTACTCGGTTTGCTCAGTGTGATAAAGA 1592
Query 1381 TGAGCGACCCTGACTTGACGTCTTTGGCCCTTGGTATTGATCTGACAACACTGGGGTTAA 1440
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1593 TGAGCGACCCTGACTTGACTTCTTTGGCACTTGGTATTGATCTGACAACACTGGGGTTAA 1652
Query 1441 ATTTGAACTCAACAGAAAATCTTCATAAGACTTTTGGCTCGCCTTGGTCCAATGAACCCT 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1653 ATTTGAACTCAACAGAAAATCTTCATAAGACTTTTGGCTCGCCTTGGTCCAATGAACCCT 1712
Query 1501 CTAAAGGTGATCCAGAATTCAGTGTACCGCAATGTTACTACGCAAAAAACCCTCCACCCC 1560
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1713 CTAAAGTTGATCCAGAATTCAGTGTACCGCAGTGTTACTACGCAAAAAACCCTCCACCTC 1772
Query 1561 TACACCAAGGGCTCTTTGCAAAATTATTGGTAGAAACATTGTTTTACATATTCTATAGCA 1620
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1773 TACATCAAGGGCTCTTTGCAAAATTATTGGTAGAAACATTGTTTTACGTATTCTATAGCA 1832
Query 1621 TGCCGAAAGATGAGGCGCAACTATATGCGGCAAATGAACTTTACAATAGGGGTTGGTTCT 1680
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1833 TGCCGAAAGATGAGGCGCAACTCTATGCGGCTAATGAACTTTACAATAGGGGTTGGTTCT 1892
Query 1681 ACCACAAAGAACACAGGTTGTGGTTCATTAGAATCGGGGAACCTCTCGTGAAAACAAATG 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1893 ACCACAAAGAACACAGGTTGTGGTTCATTAGAATCGGGGAACCTCTCGTGAAAACAAATG 1952
Query 1741 TGTATGAAAGAGGATCATATCACTGTTTTGATCCAAACTCATTTGAGATCGTTCAAAAGG 1800
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1953 CGTATGAAAGAGGATCATATCACTGTTTTGATCCAAACTCATTTGAGATCGTTCAAAAGG 2012
Query 1801 AAAATTTTGTTCTCTATTACGAGATGCTGGAAAAAAGACCATCCCTATCTCAAGATTCTC 1860
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 2013 AAAATTTTGTTCTCTATTACGAGATGCTGGAAAAAAGACCATCCATTTCTCAAGATTCTC 2072
Query 1861 AACATTGAGTGTAAACTATGCC 1882
||||||||||||||||||||||
Sbjct 2073 AACATTGAGTGTAAACTATGCC 2094
> AT1G07702.1 | Symbols: | snoRNA | chr1:2382251-2382331 REVERSE
LENGTH=81
Length=81
Score = 128 bits (69), Expect = 2e-28
Identities = 77/81 (95%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 67 TGTCAGACGGTTCAGGGAGAACGTTTACTTCTTCTTTCTCCGGTCAGTCTGGGGCAGCTT 126
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 81 TGTCAGACGGTTCAGGGAGGACGTTTACTTCTTCTTTCTCCGGTCAGTCTGGGGCAGCGT 22
Query 127 CTCCAGCTTTCCATCATGCTG 147
|||||| ||| ||||||||||
Sbjct 21 CTCCAGTTTTTCATCATGCTG 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93473414790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5