BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919505

Length=337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G43667.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   433    6e-121


> AT1G43667.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr1:16465056-16465565 
REVERSE LENGTH=510
Length=510

 Score =  433 bits (234),  Expect = 6e-121
 Identities = 303/336 (90%), Gaps = 5/336 (1%)
 Strand=Plus/Plus

Query  3    TTATTAAAATTAAAAGACATGAAATTCACAACTTTAGCATTCATTGTCTTTGTTCTATCG  62
            ||||| | |||| || |||||||||| ||||| |||||||||||| ||||||||||||||
Sbjct  83   TTATT-ATATTAGAATACATGAAATTTACAACATTAGCATTCATTTTCTTTGTTCTATCG  141

Query  63   TCGGTGGCTCCAATATACGGAGGGATTGTTAAAGTTTCGTGGGACGAGAAGAAAGAGGCA  122
            | ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||
Sbjct  142  TTGGTGGCTCCAATATATGGAGGGATTGTTAAAGTTTCGTGGGGCGAGAAGAAAGTGGCA  201

Query  123  TGCATCGTAACAAAATTGCAACCATGCCTACCAGCGGTAACAAACGAAAGCCCACCATCA  182
            |||| ||| ||| |||||||||||||||||||| |||| | | ||| ||||| |||||||
Sbjct  202  TGCACCGTGACAGAATTGCAACCATGCCTACCATCGGTGATAGACGGAAGCCAACCATCA  261

Query  183  ACAGAATGTTGCAG-AAAATTGAAAGAACAACATTCATGTTTTTGTGATTACTTGCAAAA  241
            ||  |||||||| | |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  262  ACTCAATGTTGC-GAAAAATTGAAAGAACAAAATTCATGTTTTTGTGATTACTTGCAAAA  320

Query  242  CCCACAGTTTAGTCCATATATTACAGCTGGTAAA-AAAGTCTTAGCGGCTTGTAAAATAC  300
            |||||| ||||||| |||||||||||||| |||| ||| |||||||||||||||||||||
Sbjct  321  CCCACAATTTAGTCAATATATTACAGCTGCTAAACAAA-TCTTAGCGGCTTGTAAAATAC  379

Query  301  CTTATCCTAAATGTTGAAGTTTTGAATATTTATAAA  336
            |||||||||| ||||||||| || ||||||||||||
Sbjct  380  CTTATCCTAATTGTTGAAGTGTTAAATATTTATAAA  415



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15733805437


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5