BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919507

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G43665.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   344    3e-94


> AT1G43665.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr1:16452981-16453804 
REVERSE LENGTH=372
Length=372

 Score =  344 bits (186),  Expect = 3e-94
 Identities = 256/290 (88%), Gaps = 4/290 (1%)
 Strand=Plus/Plus

Query  21   ATGAAGTTCATCACTGCATTAGTGGTCATCGCCTTTGTCATGTC-GTCTCTGGTTCCGAC  79
            ||||||||||||||| ||||| ||||||||||||||||| |||| || ||| ||||| ||
Sbjct  1    ATGAAGTTCATCACTACATTAATGGTCATCGCCTTTGTCTTGTCGGT-TCTAGTTCCTAC  59

Query  80   CAAAGCGA-TTAGAGTTTCGAGGGAAGAGGAGAAAGTAGCTTGCATCGAGACAGATCTCC  138
            | |||| | |||||||||  || |||||  | ||||| |||||||| | ||||||||| |
Sbjct  60   CCAAGC-ACTTAGAGTTTTAAGTGAAGACAAAAAAGTGGCTTGCATTGTGACAGATCTTC  118

Query  139  AAGTATGCCAACCAGCGTTAGAAACCCCAAGCCCACCATCAACGGAATGTTGCAAAAACT  198
            ||||||||| | |||||||||| ||||||| |||||||||| ||||||||||||||||||
Sbjct  119  AAGTATGCCTATCAGCGTTAGAGACCCCAATCCCACCATCAGCGGAATGTTGCAAAAACT  178

Query  199  TAAAAATACAACAGTCATGTCTATGTGATTACATGGCAAACCCATCGATTGAGAAGTATC  258
            ||||||||||| |||| ||||||||||||||||||| ||| ||||||||||| |||||||
Sbjct  179  TAAAAATACAAAAGTCTTGTCTATGTGATTACATGGAAAATCCATCGATTGAAAAGTATC  238

Query  259  TTGAACCCGCTAGAAAAGTCTTTGCGGCTTGTGGTATGCCTTATCCTAGG  308
            ||||||| ||||||||||| ||||| || |||||||||||||||||||||
Sbjct  239  TTGAACCAGCTAGAAAAGTATTTGCAGCATGTGGTATGCCTTATCCTAGG  288



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15583002190


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5