BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919509

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G07747.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   339    1e-92


> AT1G07747.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr1:2403558-2403845 
FORWARD LENGTH=288
Length=288

 Score =  339 bits (183),  Expect = 1e-92
 Identities = 256/291 (88%), Gaps = 6/291 (2%)
 Strand=Plus/Plus

Query  21   ATGAAGATGAAGTTCACTACATTAGTTTTCATCGCGTTTGTTCTGTCCTCCCTAACTCCG  80
            |||||||||||||||||||||||||||||| | ||||||||||| || ||  |  |||||
Sbjct  1    ATGAAGATGAAGTTCACTACATTAGTTTTCGTTGCGTTTGTTCTCTCGTCAATGGCTCCG  60

Query  81   ACTAAAGCAGAGGAGAAAGAGCCATGTGTCGTGACTGATCTTATAGCATGCCTGCCAGCA  140
            || |||||||||||||||| | |||| |||||||| ||||| | ||||||||| |||| |
Sbjct  61   ACCAAAGCAGAGGAGAAAGCGGCATGCGTCGTGACAGATCTCAAAGCATGCCTACCAG-A  119

Query  141  GTA-CA-AGGCGGAAGCCCACCGTCGACAGAATGTTGCACAAAATTGAAAGA-AAAGCAG  197
             ||  | ||||| || |||||| |||||| |||||||||||||||||||||| |||  ||
Sbjct  120  -TATAATAGGCGAAACCCCACCATCGACAAAATGTTGCACAAAATTGAAAGATAAA-AAG  177

Query  198  TCGTGTTTTTGTGAGTACTGGAAAAGCCCATTGGTTGCTCCATATATGACATCTGCTAAA  257
            ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct  178  TCGTGTTTTTGTGAGTACTTGAAAAACCCATTGATTGCTCCATATATGACATCTGCTAAA  237

Query  258  CAAGTTTTAGAAGCTTGTGGAGTACCTGTTCCCGTTTGTCAAAGTTTTTAA  308
            |||||||||||||| ||||| ||||||||||| ||||||||||| ||||||
Sbjct  238  CAAGTTTTAGAAGCGTGTGGTGTACCTGTTCCTGTTTGTCAAAGGTTTTAA  288



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15281395696


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5