BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919517
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07840.2 | Symbols: | Sas10/Utp3/C1D family | chr1:2424064-... 1493 0.0
> AT1G07840.2 | Symbols: | Sas10/Utp3/C1D family | chr1:2424064-2426676
FORWARD LENGTH=1433
Length=1433
Score = 1493 bits (808), Expect = 0.0
Identities = 925/981 (94%), Gaps = 9/981 (1%)
Strand=Plus/Plus
Query 2 CAAGTTCTGAACAAGAATCATGGAGGAGATCACCAAACCGGTCCTTGTCGGAATAATTAA 61
||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 225 CAAGTACTGAACAAGAATCATGGAGGAGATCACCAAACCGGTCCTTGTTGGAATAGTTAA 284
Query 62 GAAAGAAGCTCCACAGCTAGCATCCGTGTTGAGAGATATGAAGAATGGTCTAGATGGGGT 121
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||
Sbjct 285 GAAAGAAGCTCCACAGCTAGCATCCGTGTTGAGAGAAATGAAGAATGTTCTAGATGTGGT 344
Query 122 TAGGAGCAAAGTTGAAGCTCTGACTGCAATGGTTAGAGCAAACAGTTTTCCGACAGCGGA 181
|||||||||||| ||||||||||||||| |||| | |||||||||||||||||||||||
Sbjct 345 TAGGAGCAAAGTGGAAGCTCTGACTGCATTGGTAAAAGCAAACAGTTTTCCGACAGCGGG 404
Query 182 TGGGATAAGTTATCTTGAGGCCAAGCATCTGTTACTACTAAGTTATTGCCAGGATATTGT 241
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 405 TGGGATAAGTTATCTTGAGGCCAAGCATCTGTTACTTCTAAGTTATTGCCAGGATCTTGT 464
Query 242 ATATTATCTGCTAAGGAAAGCAAAAGGATTATCTATTGATGGCCATCCTGTTGTAAGAAG 301
||||||| | |||||||||||||||||| | ||||||||||| |||||| ||||||| ||
Sbjct 465 ATATTATATTCTAAGGAAAGCAAAAGGACTCTCTATTGATGGTCATCCTCTTGTAAGGAG 524
Query 302 CCTTGTAGAGATACGAATGTTTCTGGAAAAGATTCGTCCCATAGACAAAAAACTTCAGTA 361
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 CCTTGTAGAGATACGTATGTTTCTGGAAAAGATTCGTCCCATAGACAAAAAACTTCAGTA 584
Query 362 CCAGATTCAGAAGCTCACCACAGCCGGTGGGTCTGTGACAGAGCTAGCTCATTCCGAGGG 421
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 585 CCAGATTCAGAAGCTCACCACAGCCGGTGGGCCTGTGACAGAGCTAGCTCATTCCGAGGG 644
Query 422 AAAGGGATCGGGTGATGCCCAAAAATCTGAAGATCTTTCAAATTATAAGCCTAAACCAGA 481
|||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 645 AAAGGGGTCGTGTGAAGCCCAAAAATCTGAAGATCTTTCAAATTATAAGCCTAAACCTGA 704
Query 482 CTTACTTGCTGACAAAAATGGGGATGACCAAGAGGATGATG-T-TT-ATCGACCCCCGAA 538
|||||||||||||||| | || |||||||||||||||||| | || |||||||||||||
Sbjct 705 CTTACTTGCTGACAAAGA-GG--ATGACCAAGAGGATGATGGTGTTTATCGACCCCCGAA 761
Query 539 ATTTGCTCCTATGTCTATGGATGATAAGACGTCAAAACAGGAAAGAGATGCTGCCAGAAA 598
|||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 762 ATTTGCCCCTATGTCTATGGAAGATAAGACTTCAAAACAAGAAAGAGATGCTGCCAGAAA 821
Query 599 AGAGAAACACTTATTAAGAGAAGCCACTGGAAATACATACATGAAAGATGTGTTGGACGA 658
|||||||||||| || ||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 822 AGAGAAACACTTTTTTAGACAAGCCACTGAAAATACATACATGAAAGATGTGTTGGACGA 881
Query 659 TCTGGAGGACAGGCCTGAAGAGATCAGAGACTATTATGGGGTTGAGAGCAATGAGCAGAA 718
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 882 TCTGGAGGACAGGCCTGAAGAGATTAGAGACTATTATGGGGTTGAGAGCAATGAGCAGAA 941
Query 719 GAGGTTTATGGCACAGTATGAAAGGCAACAACGGGCAGAAGAAGAGCTGTTTACCCGGGC 778
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 942 GAGGTTTATGGCACAGTATGAAAGGCAACAAAAGGCAGAAGAAGAGCTCTTTACCCGGGC 1001
Query 779 ACCTCGCACTAAAGAGGATAAGAAGAGAGAGAAGCGCTTGAAATCAAGCAGCGGGTTGCT 838
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 ACCTCGCACTAAAGAGGATAAGAAGAGAGAGAAGCGCTTGAAATCAAGCAGCGGGTTGCA 1061
Query 839 TGAACTGACTGAGGACTTTTACGATGACATCAAGTTCTTGGATAAGGATGGTGAAAAGCC 898
|||||| || ||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1062 TGAACTAACCGAGAACTTTTACGATGATATCAAGTTCTTGGATAAGGATGGTGAAAAGCC 1121
Query 899 AAG---CTTTGGCCGTAATAAAAGGGGAGGACAATTCAAGAAAAGAAAGACAAGGCACTG 955
||| ||| |||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1122 AAGAAGCTTCGGCCGTAATAAAAGGGGAGGGCCATTCAAGAAAAGAAAGACAAGGCACTG 1181
Query 956 ATATGGATACACCAGTGGTTC 976
|||||||||||||||||||||
Sbjct 1182 ATATGGATACACCAGTGGTTC 1202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47772673797
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5