BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919539

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G08035.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   597    2e-170


> AT1G08035.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G28330.1); 
Has 10 Blast hits to 10 proteins in 3 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:2494402-2495149 
FORWARD LENGTH=578
Length=578

 Score =  597 bits (323),  Expect = 2e-170
 Identities = 346/357 (97%), Gaps = 2/357 (1%)
 Strand=Plus/Plus

Query  1    GATATTGTGACACCATCACCATGGACTATGAAGAAAACTCCATTGAAGGAACATCAGCTT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  223  GATATTGTGACACCATCACCATGGACTATGAAGAAAACTCCATTGAAGGAACATCAGGTT  282

Query  61   ATGTGGAACCCATAGCTCCTCTGATCTCTAAAGGAGACAGTGGAATCATTGCAATATCTC  120
            |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct  283  ATGTGGAACCCATAACTCCTATGATCTCTAAAGGAGACAGTGGAATCATTGCAATTTCTC  342

Query  121  CACTCTGTGACCACTACAATGATCACATGAGGATTGATTCTCTTACTACTTGTTCCGATG  180
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  343  CACTCTGTGACCACTACAATAATCACATGAGGATTGATTCTCTTACTACTTGTTCCGATG  402

Query  181  AAGAAATCATCGAGTCTTTGTATCAAAACATCTTTAGTATTGTTCTCTGCCTTCAAATAG  240
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  403  AAGAAATCATTGAGTCTTTGTATCAAAACATCTTTAGTATTGTTCTCTGCCTTCAAACAG  462

Query  241  AGGAATCTGGTTGTGGTTCTCACACACCTGTCTCTGC-GCCTTGCCCTGGAGCTCCCATG  299
            |||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct  463  AGGAATCTGGTTATGGTTCTCACACACCTGTCTCTGCAG-CTTGCCCTGGAGCTCCCATG  521

Query  300  AAGCTTACCAAGTTATCAAGAAACATCGATCCAGGATTCCAACGAAAACTCTTCTGA  356
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  522  AAGCTTACCAAGTTATCAAGAAACATCGATCCAGGATTCCAACGGAAACTCTTCTGA  578



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17794783146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5