BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919540
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08040.1 | Symbols: | Protein of unknown function (DUF707) ... 2023 0.0
AT2G28310.1 | Symbols: | Protein of unknown function (DUF707) ... 1134 0.0
> AT1G08040.1 | Symbols: | Protein of unknown function (DUF707)
| chr1:2495342-2498764 REVERSE LENGTH=1620
Length=1620
Score = 2023 bits (1095), Expect = 0.0
Identities = 1167/1203 (97%), Gaps = 0/1203 (0%)
Strand=Plus/Plus
Query 1 TTGTTTGAGAATTGTGCAATCCGATGGGGACGATGCACCGGAGTGGTGCTCCCAGAAGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 TTGTTTGAGAATTGTGCAATCCGATGGGGACGATGCACCGGAGTGGTGCTCCCAGAAGGA 343
Query 61 CAAATGAAAATGCAAAGCTTATCATTACGACAATCGTGGGAATGGTGTTTGGGTTTTTTG 120
||||||||||||| ||||||||||| ||||||||||||||| |||||||||| |||||||
Sbjct 344 CAAATGAAAATGCGAAGCTTATCATAACGACAATCGTGGGAGTGGTGTTTGGTTTTTTTG 403
Query 121 TTGGTATCACATTACCATTAGGTGCCTTTAGAAAGATTAGCTTACCTTCAGGCCTTATAT 180
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 404 TTGGTATCACATTACCATTAGGTTCCTTTAGAAAGATTAGCTTACCTTCAGGCCTTATGT 463
Query 181 CATCTCTTGATGTAGCCATGTCAGATGGGAAATTGTTTTCTGGTCGCAGATCACCTGAAG 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 464 CATCTCTTGATGTAGCCATGTCAGATGGGAAATTGTTTTCTGGTGGCAGATCACCTGAAG 523
Query 241 ATTTTGGTTCAAGAAAGTCTCCTAAGATATATGTTCCAACCAATCCGCATGGTGCAGAGC 300
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 524 ATATTGGTTCAAGAAAGTCTCCTAAGATATATGTTCCAACCAATCCGCATGGTGCAGAAC 583
Query 301 TACTTCCACCTGGGATTATAGTGGCAGAAACTGATTTTTACTTGCGCAGATTATGGGGTG 360
||||||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||
Sbjct 584 TACTTCCTCCTGGGATTATAGTGGCAGAAACAGATTTCTACTTGCGCCGATTATGGGGTG 643
Query 361 AACCAAGTGAAGATTTGAAGAAGAAGCCAAAGTATCTCGTGACTTTTACTGTTGGATTAG 420
|||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 644 AACCTAGTGAAGATTTGAAGAAGAAGCCAAAGTATCTCGTAACTTTTACAGTTGGATTTG 703
Query 421 AGCAGAGGAACAACATTAATGCAGCTGTTCTGAAGTTTTCTGAAGATTTCCAAATCTTGC 480
||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 704 AGCAGAGAAACAACATTAATGCAGCTGTTAAGAAGTTTTCTGAAGATTTCCAAATATTGT 763
Query 481 TATTCCATTATGATGGCCGGACAACTGAGTGGGACCAGTTTGAGTGGTCAAAAAACGCAA 540
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 764 TATTCCATTATGATGGCCGAACAACTGAGTGGGACCAGTTTGAGTGGTCTAAAAATGCAA 823
Query 541 TACATATCAGTGCAAAAAAGCAAACAAAATGGTGGTATGCAAAGAGATTTTTGCATCCTG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 TACATATCAGTGCAAAAAAGCAAACAAAATGGTGGTATGCAAAGAGATTTTTGCATCCTG 883
Query 601 ATGTTGTCTCAGCTTATGAGTATATATTTATATGGGATGAAGATCTTGGAGTCGAGCACT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 ATGTTGTCTCAGCTTATGAGTATATATTTATATGGGATGAAGATCTTGGAGTCGAGCACT 943
Query 661 TCAATGCAGATAGGTACATTGAGTTAGTCAAGAAGCATGGTTTGGAGATTTCTCAACCAG 720
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 944 TCAATGCAGATAGGTACGTTGAGTTAGTTAAGAAGCATGGTTTGGAGATTTCTCAACCAG 1003
Query 721 GCTTAGAGCCAAACAACGGACTTACATGGGAAATGACAAAGAGGAGAGGTGACCGAGATG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 GCTTAGAGCCAAACAACGGACTTACATGGGAAATGACAAAGAGGAGAGGTGACCGAGATG 1063
Query 781 TCCACAAAGAAACTAAGGAAAAACCAGGATGGTGCAGTGATCCACATTTACCCCCATGTG 840
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1064 TCCACAAAGAAACTAAGGAAAAACCAGGATGGTGCAGTGATCCACATTTACCTCCATGTG 1123
Query 841 CTGCATTTGTTGAGATTATGGCACCTGTATTTTCTAGAGAAGCATGGCGATGTGTATGGC 900
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 CTGCGTTTGTTGAGATTATGGCACCTGTATTTTCTAGAGAAGCATGGCGATGTGTATGGC 1183
Query 901 ATATGATTCAGAATGATCTTGTTCATGGATGGGGTCTCGATTTTGCTCTCAGACGATGCG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 ATATGATTCAGAATGATCTTGTTCATGGATGGGGTCTCGATTTTGCTCTCAGACGATGCG 1243
Query 961 TTCAGCCTGCTCATGAGAAGATTGGTGTGGTAGATTCACAGTGGATTATCCATCAAGTGA 1020
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 TTGAGCCTGCTCATGAGAAGATTGGTGTGGTAGATTCACAGTGGATTATCCATCAAGTGA 1303
Query 1021 TTCCTTCCCTTGGAAGTCAGGGTGAGTCGGAGAAGGGGAAATCTCCATGGCAAGGGGTGA 1080
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1304 TTCCTTCCCTTGGAAGTCAGGGTGAGTCGGAGGAGGGGAAATCTCCATGGCAAGGGGTGA 1363
Query 1081 GAGAGAGATGCAGAAACGAATGGACGATGTTCCAGAATCGCGTGGCAGAAGCAGATAAAG 1140
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1364 GGGAGAGATGCAGAAACGAATGGACGATGTTCCAGAATCGCGTGGCAGAAGCTGATAAAG 1423
Query 1141 CATACATGGAACAACACAAGGTTAAAGAATAATTGGGGCCTCTTCTTACTATGTCTCTGT 1200
|||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct 1424 CATACATGGAACAACACAAGGTAAAAGAATAATTTGGGCCTCTTCTTACTCTGTCTCTGT 1483
Query 1201 AAA 1203
|||
Sbjct 1484 AAA 1486
> AT2G28310.1 | Symbols: | Protein of unknown function (DUF707)
| chr2:12085377-12088060 FORWARD LENGTH=1535
Length=1535
Score = 1134 bits (614), Expect = 0.0
Identities = 960/1124 (85%), Gaps = 35/1124 (3%)
Strand=Plus/Plus
Query 24 ATGGGGACGATGCACCGGAGTGGTGCTCC-CAGAAGGACAAATGAAAATGCAAAGCTTAT 82
||||| || |||||||| ||||||||||| | |||| || ||||||||||||||| ||||
Sbjct 239 ATGGGAACAATGCACCGCAGTGGTGCTCCTC-GAAGAACGAATGAAAATGCAAAGGTTAT 297
Query 83 CATTACGACAATCGTGGGAATGGTGTTTGGGTTTTTTGTTGGTATCACATTACCATT-AG 141
||||| || || |||| || ||||||||| |||| |||||||||||||||| || |
Sbjct 298 TATTACTACTATTTTGGGGATAGTGTTTGGGACTTTTATTGGTATCACATTACC-TTCAC 356
Query 142 GTGCCTTTAGAAAGATTAGCTTACCTTCAG-GCCTTATATCATCTCTTGATGTAGCCATG 200
| | ||| ||||||| |||||| || | |||||||||||||||||||||||| |
Sbjct 357 TTTCGTTT---AAGATTAACTTACCCTC-GCGCCTTATATCATCTCTTGATGTAG-C--- 408
Query 201 TCAGATGGGAAATTGTTTTCTGGTCG-CAGATCACCTGAAGATTTTGGTTCAAGAAAGTC 259
| || | |||||| | || ||| ||||||||||| |||||||||||||
Sbjct 409 -C--AT-----A------TCTGGT-GACAAATCCCCTGAAGATTTCGGTTCAAGAAAGTT 453
Query 260 TCCTAAGATATATGTTCCAACCAATCCGCATGGTGCAGAGCTACTTCCACCTGGGATTAT 319
|||| |||||||||||||||| || |||| ||||||||| ||||| || || || || |
Sbjct 454 TCCTGAGATATATGTTCCAACTAACCCGCGTGGTGCAGAACTACTACCTCCAGGAATCGT 513
Query 320 AGTGGCAG-AAACTGATTTTTACTTGCGCAGATTATGGGGTGAACC-AAGTGAAGATTTG 377
||||| | ||||||||||||||||||| ||||||||||| ||||| || ||||||||||
Sbjct 514 TGTGGC-GAAAACTGATTTTTACTTGCGTAGATTATGGGGAGAACCTAA-TGAAGATTTG 571
Query 378 AAGAAGAAGCCAAAGTATCTCGTGACTTTTACTGTTGGATTAGAGCAGAGGAACAACATT 437
|||||||||||||| ||||| ||||| ||||| |||||||| |||||||||||| | |||
Sbjct 572 AAGAAGAAGCCAAAATATCTTGTGACATTTACAGTTGGATTTGAGCAGAGGAACCATATT 631
Query 438 AATGCAGCTGTTCTGAAGTTTTCTGAAGATTTCCAAATCTTGCTATTCCATTATGATGGC 497
|||| || |||| |||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 632 AATGGAGTTGTTAAGAAGTTTTCTGAAGATTTCCAAATTTTGCTCTTCCATTATGATGGC 691
Query 498 CGGACAACTGAGTGGGACCAGTTTGAGTGGTCAAAAAACGCAATACATATCAGTGCAAAA 557
||||||||||| |||||||| ||||||||||| || | ||| || ||||| ||| ||| |
Sbjct 692 CGGACAACTGAATGGGACCAATTTGAGTGGTCGAAGAGCGCGATTCATATTAGTACAAGA 751
Query 558 AAGCAAACAAAATGGTGGTATGCAAAGAGATTTTTGCATCCTGATGTTGTCTCAGCTTAT 617
|||||||||||||||||||| || ||||| |||||||||||||||||||| |||||||||
Sbjct 752 AAGCAAACAAAATGGTGGTACGCGAAGAGGTTTTTGCATCCTGATGTTGTGTCAGCTTAT 811
Query 618 GAGTATATATTTATATGGGATGAAGATCTTGGAGTCGAGCACTTCAATGCAGATAGGTAC 677
||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||| ||||
Sbjct 812 GAGTACATATTTATATGGGATGAAGATCTTGGAGTGGAGCATTTCAATGCGGATAAGTAC 871
Query 678 ATTGAGTTAGTCAAGAAGCATGGTTTGGAGATTTCTCAACCAGGCTTAGAGCCAAACAAC 737
||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 872 ATTGAGTTAGTTAAGAAGCATGGTTTAGAGATTTCTCAACCAGGCTTAGAGCCTAACAAT 931
Query 738 GGACTTACATGGGAAATGACAAAGAGGAGAGGTGACCGAGATGTCCACAAAGAAACTAAG 797
||||| |||||||||||||||||||||||||||||||| || ||||| ||||| || ||
Sbjct 932 GGACTCACATGGGAAATGACAAAGAGGAGAGGTGACCGGGAAGTCCATAAAGATACAAAA 991
Query 798 GAAAAACCAGGATGGTGCAGTGATCCACATTTACCCCCATGTGCTGCATTTGTTGAGATT 857
|| |||||||||||||| | || ||||||||||| |||||||| || |||||||| ||
Sbjct 992 GAGAAACCAGGATGGTGTAAAGACCCACATTTACCTCCATGTGCCGCGTTTGTTGAAATA 1051
Query 858 ATGGCACCTGTATTTTCTAGAGAAGCATGGCGATGTGTATGGCATATGATTCAGAATGAT 917
||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1052 ATGGCGCCTGTATTTTCTCGAGAAGCATGGCGATGTGTGTGGCATATGATTCAGAATGAT 1111
Query 918 CTTGTTCATGGATGGGGTCTCGATTTTGCTCTCAGACGATGCGTTCAGCCTGCTCATGAG 977
|| |||||||||||||||||||| ||||| || ||| |||||||| | ||||||||||||
Sbjct 1112 CTGGTTCATGGATGGGGTCTCGACTTTGCGCTTAGAAGATGCGTTGAACCTGCTCATGAG 1171
Query 978 AAGATTGGTGTGGTAGATTCACAGTGGATTATCCATCAAGTGATTCCTTCCCTTGGAAGT 1037
||||||||||| || ||||| || ||||| || ||| ||||||| ||||| |||||||||
Sbjct 1172 AAGATTGGTGTTGTGGATTCGCAATGGATAATACATAAAGTGATACCTTCACTTGGAAGT 1231
Query 1038 CAGGGTGAGTCGGAGAAGGGGAAATCTCCATGGCAAGGGGTGAGAGAGAGATGCAGAAAC 1097
|| || |||| ||||| |||||| ||||||||||||| |||||||| ||||||| |||
Sbjct 1232 CAAGGAAAGTCAGAGAATGGGAAAGCTCCATGGCAAGGAGTGAGAGATAGATGCA-AAAT 1290
Query 1098 G-AATGGACGATGTTCCAGAATCGCGTGGCAGAAGCAGATAAAG 1140
| ||||||| ||||| ||||| || |||| || || |||||||
Sbjct 1291 GGAATGGACAATGTTTCAGAACCGATTGGCTGATGCTGATAAAG 1334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59086041465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5