BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919552
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08125.2 | Symbols: | S-adenosyl-L-methionine-dependent met... 1478 0.0
> AT1G08125.2 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr1:2539614-2542334
REVERSE LENGTH=1305
Length=1305
Score = 1478 bits (800), Expect = 0.0
Identities = 884/925 (96%), Gaps = 3/925 (0%)
Strand=Plus/Plus
Query 37 CAGGTTAAATTCTCCAACCACCTGTACTGTCACCATTGAGGTTTTGGGGCACGAATTAAA 96
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
Sbjct 235 CAGGTTAAATTCTCCAAGCACCTGTACTGTTACCATTGAGGTTTTGGGGCACGAATTAGA 294
Query 97 CTTTGCTCAGGATCCTAATTCGAAGCATTTAGGAACAACCGTGTGGGATGCGTCCATGGT 156
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 295 CTTTGCTCAGGATCCAAATTCGAAGCATTTAGGAACGACCGTGTGGGATGCGTCCATGGT 354
Query 157 GTTTGCCAAGTATCTGGGGAAAAATTGCAGGAAGGGAAGGTTTAGTCCATCTAAACTGAA 216
||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 355 GTTTGCCAAATATCTGGGGAAAAATAGCAGGAAGGGAAGGTTTAGTTCATCTAAACTGAA 414
Query 217 AGGGAAACGTGCTATTGAACTAGGAGCAGGTTGTGGCGTTGCAGGATTTGCTTTGGCGAT 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 AGGGAAACGTGCTATTGAACTAGGAGCAGGTTGTGGCGTTGCAGGATTTGCTTTGGCGAT 474
Query 277 GCTGGGGTGTGACGTGGTTACAACTGACCAAAGGGAGGTATTACCACTACTAAAGAGGAA 336
|||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 475 GCTGGGGTGTGATGTGGTTACAACTGACCAAAAGGAGGTATTACCACTGCTAAAGAGGAA 534
Query 337 TGTAGAATGGAATACGTCCACAATCTTGCAGATGACTCCTGGTTCAGCATCATTTGGATC 396
|||||||||||||||||||| |||| | ||||||| |||||||||||||| || |||||
Sbjct 535 TGTAGAATGGAATACGTCCAGAATCGTACAGATGAATCCTGGTTCAGCAT--TT-GGATC 591
Query 397 GCTCCGAGTTGCAGAACTTGACTGGGGAAATGAAGATCATATAAGGGCCGTTGGGCCGCC 456
|||||| ||||||||||| ||||||||||| ||||||||||||| |||||||| ||| ||
Sbjct 592 GCTCCGGGTTGCAGAACTCGACTGGGGAAACGAAGATCATATAACGGCCGTTGAGCCTCC 651
Query 457 CTTTGACTATGTCATCGGTACTGATGTTGTATATTCTGAGCAGCTTCTGGAACCTCTATT 516
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 652 CTTTGACTATGTCATCGGTACTGATGTTGTATATTCTGAGCAGCTTCTGGAACCGCTATT 711
Query 517 GCGTACGATACTTGCGCTATCAGGGCCAAAGACAATAGTTATGTTGGGATATGAGATACG 576
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 712 GCGTACGATACTTGCATTATCAGGGCCAAAGACAACAGTTATGTTGGGATATGAGATACG 771
Query 577 TTCGACTGTTGTTCATGATAAAATGCTTCAGATGTGGAAAGACAACTTTGAAGTCAAAAC 636
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TTCGACGGTTGTTCATGAGAAAATGCTTCAGATGTGGAAAGACAACTTTGAAGTCAAAAC 831
Query 637 CATACCGAGGTCCAAGATGGATGGTGAATACCAAGACCCGAGCATTCATCTGTACATCAT 696
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 CATACCGAGATCCAAGATGGATGGTGAATACCAAGACCCGAGCATTCATCTGTACATCAT 891
Query 697 GGCACAGAAATCTCCTGCCGAGAGCTCTGGAAACGTGAGCCGAGATGAAGTTATTATTGA 756
||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 892 GGCACAGAAATCTGCTGCCGAGAGCTCTGGAAACGTAAGCCGAGATGAAGTTGTTATAGA 951
Query 757 CACAGAAGAAACAAAGTGTGAGACGAAAGTCCCAACTGGAGAATGCCAGAACAGGGTGGA 816
|||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 952 CACAGACGAAACAAAGTGTGAGACGAAAGTCCCAACCGGAGAATGCCATAAGAGGGTGGA 1011
Query 817 AGAGGAAGCTGTTGTTACACATGGTCCTCGTCTAAATGAAGATAGTTTGTTGATGAGACT 876
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1012 AGAGGAAGCTGTTGTTACACATGGTCCTCGTCTTAATGAAGATAGTTTGTTGATGAGACT 1071
Query 877 ACGGGACGGAAAGCTAAGTGAATGGGAGATGAGAAGGTATGGTACAGTTGCTGCACAGCT 936
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 ACGGGATGGAAAGCTAAGTGAATGGGAGATGAGAAGGTATGGTACAGTTGCTGCACAGCT 1131
Query 937 TCTCCGTGACGTTAAGATAGATGTT 961
|||||||||||||||||||||||||
Sbjct 1132 TCTCCGTGACGTTAAGATAGATGTT 1156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5