BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919562

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G08180.1 | Symbols:  | unknown protein; Has 53 Blast hits to...   761    0.0  


> AT1G08180.1 | Symbols:  | unknown protein; Has 53 Blast hits 
to 53 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa 
- 1; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:2564572-2565121 REVERSE LENGTH=550
Length=550

 Score =  761 bits (412),  Expect = 0.0
 Identities = 480/511 (94%), Gaps = 12/511 (2%)
 Strand=Plus/Plus

Query  1    ACTTTCACATCCATGTGACCATGTCTAAGGTTCTCGAGCCCCTagaagaagaaaagacag  60
            ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct  26   ACTTTCACATCCATGTGACCATGTCTAAGCTTCTCGAGACCCTAGAAGAAGAAAAGACAG  85

Query  61   tagagcagaaacccagaagccaagaagaagaagatcatcaagaga-catcgaagaaagaa  119
            ||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct  86   TAGAGCAGAAACCCAGAAGCCAAGAAGAAGAAGATCATCAAGATAGC-TCGAAGAAAGAA  144

Query  120  gaGTTGTTAGAATCTTTGTGTACTCCAACTTCAAGTGATCACAAGATTCCGGAGGTGGAG  179
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  145  GAGTTGTTAGAATCTCTGTGTACTCCAACTTCAAGTGATCACAAGATTCCGGAGGTGGAG  204

Query  180  ACATGTCCTCCGCCGCCAAGAAAGCGACCGCGTGAGATTTCTCTGACAAAGAAGAAAAGA  239
            || ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct  205  ACGTGTCCTCCGCCGCCAAGAAAGCGACCGCGTGAGATTTCTCTCACAAAGAAGACAAGA  264

Query  240  TTGTCCAAAGATCTTCGGTTCTTCGAAGCCACCGACGTCGGAAGCCAAGAGGTAGAGACT  299
            ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct  265  TTGTCCAAAGATCTTCGGTTCTTTGAAGCCACCGACGTCGGGAGCCAAGAGGTAGAGACT  324

Query  300  TTATTTGTTCACGAACCAAACCATATCCGTAAGAAACGGAGGAGTTATAGTGCCTGAATC  359
            |||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||
Sbjct  325  TTATTTGTTCACGAACCAAACCATGTCCGTAAGAAACGAAGGAGTAATAGTGCCTGAATC  384

Query  360  AAATTTGATTCTGTAGATATACTCTTCTTTCTTTACCT--TT-ACACATAATTTTCAATC  416
            |||||||||||||||||||||||||||||||||||| |  || ||||||||||||| |||
Sbjct  385  AAATTTGATTCTGTAGATATACTCTTCTTTCTTTACTTGATTTACACATAATTTTCGATC  444

Query  417  GCTTT-ATATACAACTTATTATAATAA-TCTTTAGTCCGAATTCGTGTTT-CTTTATGGG  473
             |||| ||||||  || ||| |||||| |||||||||||||||||| ||| ||| |||||
Sbjct  445  ACTTTTATATAC--CT-ATTTTAATAAATCTTTAGTCCGAATTCGTATTTTCTT-ATGGG  500

Query  474  ATTTTAACTCTGCTTGTGTACATGATTTTGT  504
            |||||||||||| || |||||||||||||||
Sbjct  501  ATTTTAACTCTGGTTCTGTACATGATTTTGT  531



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5