BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg919562 Length=504 Score E Sequences producing significant alignments: (Bits) Value AT1G08180.1 | Symbols: | unknown protein; Has 53 Blast hits to... 761 0.0 > AT1G08180.1 | Symbols: | unknown protein; Has 53 Blast hits to 53 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:2564572-2565121 REVERSE LENGTH=550 Length=550 Score = 761 bits (412), Expect = 0.0 Identities = 480/511 (94%), Gaps = 12/511 (2%) Strand=Plus/Plus Query 1 ACTTTCACATCCATGTGACCATGTCTAAGGTTCTCGAGCCCCTagaagaagaaaagacag 60 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 26 ACTTTCACATCCATGTGACCATGTCTAAGCTTCTCGAGACCCTAGAAGAAGAAAAGACAG 85 Query 61 tagagcagaaacccagaagccaagaagaagaagatcatcaagaga-catcgaagaaagaa 119 ||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| Sbjct 86 TAGAGCAGAAACCCAGAAGCCAAGAAGAAGAAGATCATCAAGATAGC-TCGAAGAAAGAA 144 Query 120 gaGTTGTTAGAATCTTTGTGTACTCCAACTTCAAGTGATCACAAGATTCCGGAGGTGGAG 179 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 145 GAGTTGTTAGAATCTCTGTGTACTCCAACTTCAAGTGATCACAAGATTCCGGAGGTGGAG 204 Query 180 ACATGTCCTCCGCCGCCAAGAAAGCGACCGCGTGAGATTTCTCTGACAAAGAAGAAAAGA 239 || ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 205 ACGTGTCCTCCGCCGCCAAGAAAGCGACCGCGTGAGATTTCTCTCACAAAGAAGACAAGA 264 Query 240 TTGTCCAAAGATCTTCGGTTCTTCGAAGCCACCGACGTCGGAAGCCAAGAGGTAGAGACT 299 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 265 TTGTCCAAAGATCTTCGGTTCTTTGAAGCCACCGACGTCGGGAGCCAAGAGGTAGAGACT 324 Query 300 TTATTTGTTCACGAACCAAACCATATCCGTAAGAAACGGAGGAGTTATAGTGCCTGAATC 359 |||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| Sbjct 325 TTATTTGTTCACGAACCAAACCATGTCCGTAAGAAACGAAGGAGTAATAGTGCCTGAATC 384 Query 360 AAATTTGATTCTGTAGATATACTCTTCTTTCTTTACCT--TT-ACACATAATTTTCAATC 416 |||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||| Sbjct 385 AAATTTGATTCTGTAGATATACTCTTCTTTCTTTACTTGATTTACACATAATTTTCGATC 444 Query 417 GCTTT-ATATACAACTTATTATAATAA-TCTTTAGTCCGAATTCGTGTTT-CTTTATGGG 473 |||| |||||| || ||| |||||| |||||||||||||||||| ||| ||| ||||| Sbjct 445 ACTTTTATATAC--CT-ATTTTAATAAATCTTTAGTCCGAATTCGTATTTTCTT-ATGGG 500 Query 474 ATTTTAACTCTGCTTGTGTACATGATTTTGT 504 |||||||||||| || ||||||||||||||| Sbjct 501 ATTTTAACTCTGGTTCTGTACATGATTTTGT 531 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24062156413 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5