BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919568

Length=475
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G08250.1 | Symbols: ADT6 | arogenate dehydratase 6 | chr1:25...   370    7e-102


> AT1G08250.1 | Symbols: ADT6 | arogenate dehydratase 6 | chr1:2588857-2590301 
REVERSE LENGTH=1445
Length=1445

 Score =  370 bits (200),  Expect = 7e-102
 Identities = 280/316 (89%), Gaps = 16/316 (5%)
 Strand=Plus/Plus

Query  67    CAAGACTAGTATCGACTTTGCGCACGAGAAAGGAACCAGCGTGCTTTTCAAAGTGCTCTC  126
             ||||||||| || | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  981   CAAGACTAGCATTGTCTTTGCGCACGAGAAAGGAACCAGCGTGCTTTTCAAGGTGCTCTC  1040

Query  127   TGCTTTCGCCTTTAgggggggACATTAGTTTGACGAAGATCGAATCAAGGCCGAATCACA  186
             |||||||||||| || |    ||||||| ||||||||||||||||| |||||||||||||
Sbjct  1041  TGCTTTCGCCTTCAGAG----ACATTAGCTTGACGAAGATCGAATCGAGGCCGAATCACA  1096

Query  187   ACCGTCCGATCAGGCTTGTCGATGATGCAAATGTCGGGA-G-C-A----TTTTGAGTTAC  239
             |||||||||||||| | || |||||||| |||||||||| | | |    |||||||| ||
Sbjct  1097  ACCGTCCGATCAGGGTCGTGGATGATGCCAATGTCGGGACGGCGAAGCATTTTGAGT-AC  1155

Query  240   AAGTTTTACGTCAACTTCGAGGTCTCGATGGCAGAGGCGCGTGCTCAGAACGCGCTTACC  299
             | |||||| ||  ||||||||| ||||||||| |||||||||||||||||||||||| ||
Sbjct  1156  ATGTTTTATGTTGACTTCGAGGCCTCGATGGCGGAGGCGCGTGCTCAGAACGCGCTTGCC  1215

Query  300   GAGGTTCAGGAGTTTACATCGTTCGTTCTTGCGGGTGCTGGGGAGTTATCCCATGGATAT  359
             |||||||||||||||||||||||| ||   ||||||||| ||||||||||||||||||||
Sbjct  1216  GAGGTTCAGGAGTTTACATCGTTC-TT---GCGGGTGCTTGGGAGTTATCCCATGGATAT  1271

Query  360   GACTCCTTGGTCACCA  375
             ||||||||||||||||
Sbjct  1272  GACTCCTTGGTCACCA  1287



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22605366150


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5