BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919569

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G08250.1 | Symbols: ADT6 | arogenate dehydratase 6 | chr1:25...   326    9e-89


> AT1G08250.1 | Symbols: ADT6 | arogenate dehydratase 6 | chr1:2588857-2590301 
REVERSE LENGTH=1445
Length=1445

 Score =  326 bits (176),  Expect = 9e-89
 Identities = 192/200 (96%), Gaps = 0/200 (0%)
 Strand=Plus/Plus

Query  61   CTTACTCTGAAGCAGCCGCCGGTAAAGCTTATCCTAACTGTCAAGCTATACCTTGCGATC  120
            ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct  443  CTTACTCTGAAGCAGCCGCTGGTAAAGCTTATCCTAATTGTCAAGCTATACCTTGCGATC  502

Query  121  AATTTGAGGTTGCGTTTCAAGCGGTGGAGCTTTGGATCTCAGATCGTGCTGTTTTACCGG  180
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  503  AATTTGAGGTTGCGTTTCAAGCGGTGGAGCTTTGGATCGCAGATCGTGCTGTTTTACCGG  562

Query  181  TGGAGAACTCTCTCGGCGGTTCTATTCACCGGAATTACGATCTTCTCCTCCGTCATCGTC  240
            ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||
Sbjct  563  TGGAGAACTCTCTCGGCGGTTCTATCCACCGTAATTACGATCTCCTCCTCCGTCACCGTC  622

Query  241  TTCACATAGTCGGCGAAGTT  260
            |||| |||||||||||||||
Sbjct  623  TTCATATAGTCGGCGAAGTT  642



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13471756732


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5