BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919579
Length=1810
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08350.2 | Symbols: | Endomembrane protein 70 protein famil... 2765 0.0
> AT1G08350.2 | Symbols: | Endomembrane protein 70 protein family
| chr1:2632810-2635852 REVERSE LENGTH=2013
Length=2013
Score = 2765 bits (1497), Expect = 0.0
Identities = 1699/1799 (94%), Gaps = 3/1799 (0%)
Strand=Plus/Plus
Query 7 AAGTGTGTCAATTCATGGCGCCATTTCTGCTTACTGTACTACAAGTCCTACTCGCATTGA 66
||| ||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 70 AAGAGTGCCAATTCATGGCGCAATTTCTGCTTACTGTACTACAAGTCCTACTTGCATTGA 129
Query 67 CCTTCTGGATCGGAATCGGATCAGGCTCGTCGAACCGTTATAATGCCGGCGATCATGTCC 126
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 130 CCTTCTGGATCGGAATCGGATCAGGCTCGTCGAACCATTATAATGCCGGCGATCATGTCC 189
Query 127 CTTTGTTCGTCAACAAAGTGGGTCCTCTCCGCAATCCAAGTGAGACCTATCAATACTATG 186
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 190 CTTTGTTCGTCAACAAAGTGGGTCCTCTCCACAATCCGAGTGAGACCTATCAATACTATG 249
Query 187 ATTTGCCATTCTGCCGTCCAGAGCCTGTGATTGAGAAACAGGAAACTCTTGGGGAAGTTC 246
||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 250 ATTTGCCGTTCTGCCGTCGAGGGCCTGTGATTGAGAAACAGGAAACTCTTGGGGAAGTTC 309
Query 247 TTAATGGTGACCGATTAATGAGCTCACTATATGAGCTGAAATTTAGGGAGGACAAAACTC 306
|||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 310 TTAATGGTGATCGTTTAATGAGCTCTTTATATAAGCTGAAATTTAGGGAGGACAAAACTC 369
Query 307 ATCTTGTATTGTGCCGTAAGAGATTAACATCGAGTGATGTTGCCAGGTTCAGAGATACTA 366
|| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 370 ATTTTGTATTGTGCCGGAAGAGATTAACATCGAGTGATATTGCCAGGTTCAGAGATATTA 429
Query 367 TTGCTCAAGATTACTACTTTCAAATGTATTACGATGATCTCCCGTTGTGGGGATTTGTTG 426
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 430 TTGCTCAAGATTACTACTTTCAAATGTACTACGATGATCTCCCTTTGTGGGGATTTGTTG 489
Query 427 GAAAAGTAGAGGGAGATTATTTTGGTCAAGAGGAGAAGCACACTAAGTATTATATATTCA 486
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 490 GAAAAGTAGAGGGAGATTATTTTGGTCAAGGGGAGAAGCATACTAAGTATTATATATTCA 549
Query 487 GTCACTTAAAGTTTAATGTTCTGTACAATGCAGACGAAGTTATTGAAATCAACAGTTTTA 546
||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 550 GTCACTTAAAGTTCAATGTTCTGTACAATGCAGACAAAGTTATTGAGATCAACAGTTTTA 609
Query 547 GTGATCCGAGTTATCTGGTTGATATATCCGAGAACACTGAGACTGATGTTCAATTTACAT 606
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 610 GTGATCCGAGTTATATGGTTGATATATCCGAGAACACTGAGATTGATGTTCAATTTACAT 669
Query 607 ACTCGGTTTCTTGGAATCTGACTTCAGAACGCTCTGAGACAAGAATGAATAAGTACTCCC 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 ACTCGGTTTCTTGGAATCTGACTTCAGAACGCTCTGAGACAAGAATGAATAAGTACTCCC 729
Query 667 AGGCGTCGCTTCATCCGATCAGCCAGAAGATTCACTTCTTCTCATTTCTTAACTCGATAA 726
||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 730 GGGCGTCGTTTCATCCTATCAGCCAGAAGATTCACTTCTTCTCATTTCTCAACTCGATAA 789
Query 727 CTGTTGTAGTTTTGTTAATTGGACTTCTTTCTTTGCTCTTCGTGCGCCATCTCAAGAATG 786
||||||| |||||||||||||||||| | ||||| |||||| ||||||||||||||||||
Sbjct 790 CTGTTGTTGTTTTGTTAATTGGACTTATATCTTTTCTCTTCATGCGCCATCTCAAGAATG 849
Query 787 AACTAAGAAGTTCCTCGATTGGAGATGAAGAAGaaaaaaaGGAAGTGGGTTGGAAACTTG 846
|||||||||||| ||| || |||||||||||||| | |||||||| ||||||||||| |
Sbjct 850 AACTAAGAAGTTACTCTATCGGAGATGAAGAAGAGAGAAAGGAAGCAGGTTGGAAACTCG 909
Query 847 TACAAAGTGATGTATTTAGATGTCCTCGGAACGTCTCCTTGCTCTGTGCGTTCTTAGGAA 906
|||| |||||||||||| |||||||||||||| || || ||| ||||| |||||||||
Sbjct 910 TACATAGTGATGTATTTCGATGTCCTCGGAACATCAGCTGGCTTTGTGCAATCTTAGGAA 969
Query 907 CTGGTACTCAGTTGCTAATCTTGATTATTGCTCTATTTGCATTGGCCTTCACCGGTTTTT 966
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 CTGGTACTCAGTTGCTAATCTTGATTATTGCTCTATTTGCATTGGCCTTCACCGGTTTTC 1029
Query 967 TATACCCATACAATCGCGGAATGCTGTTGACTTCTCTCGTCATCATGTACACTCTAACAT 1026
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 TCTACCCATACAATCGTGGAATGCTGTTGACTTCTCTCGTCATCATGTACACTCTAACAT 1089
Query 1027 CCGTAGTGGCTGGTTACACATCTGCTTCTTTCCATAGCCAATTCGAGGGAAACAAACAGA 1086
| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1090 CAATAGTGGCTGGTTACACATCTACTTCTTTCCATAGCCAATTCGAGGGAAATAAACAGA 1149
Query 1087 AAAGGAGTGTTCGTCTTGCTGGGATCCTCTATCCTGTCCCTTTCTTGATAATAGTTTCGG 1146
|||||||||||||||||||||||||||||||||| || |||||||| |||||| ||||||
Sbjct 1150 AAAGGAGTGTTCGTCTTGCTGGGATCCTCTATCCGGTTCCTTTCTTCATAATACTTTCGG 1209
Query 1147 TCCTCAACACTGTGGCAATCACTTACGGGGCAACAGCTGCACTCCCCTTTGGCACAATAG 1206
| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1210 TTCTCAACACTGTGGCAATTACTTATGGGGCAACAGCTGCACTCCCCTTTGGCACAATAG 1269
Query 1207 TCATCATCAT-CTTCATTTTCACTCTTTTGAATATCCCATTTCTCATGTTGGGAGGAGTT 1265
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 TCATCATCATACT-CATTTTCACTCTTTTGAATATCCCATTTCTCATGTTGGGAGGAGTG 1328
Query 1266 TTAGGTAACCGGTTCGGATTATTAGAGTTTCAACCTCCAACCGCTGTTAAAAGAAACCCC 1325
||||||||||| || |||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1329 TTAGGTAACCGATTTGGATTATTAGAGTTTCAACCCCCATCCGCTGTTAAAAGAAACCCC 1388
Query 1326 CGTGAAATTCCACTTCAGAATTGGTATCGTAGAAAGCTGTACCAGTTGTTTCTTGGAGGC 1385
|| |||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||||
Sbjct 1389 CGAGAAATTCCACCACAGAATTGGTACCGTAGAAAGCTGTATCAGGTGTTTCTTGGAGGC 1448
Query 1386 TTTGTACCTTTCATTGCAGTTGTTCTCGAGTGGCACCAACTCTATGCAAGCTTGTGGGGA 1445
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1449 TTTGTACCTTTCAGTGCAGTTGTTCTCGAATGGCACCAACTCTATGCAAGCTTGTGGGGA 1508
Query 1446 TTCAAAATATATACCTCGCCTGGAATAATGCTTTTTACATTCGCTGTGCTCATCTTCTTG 1505
|| || |||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1509 TTTAAGATATATACCTCGCCTGGAATAATGCTTTTTACATTCATTGTGCTTATCTTCTTG 1568
Query 1506 AGTACGAGTGTCGGTATTATCTTGACCTACATTCAGCTATCCGGTGAAGATCATGAATGG 1565
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1569 AGTTCGAGTGTCGGTATTATCTTGACCTACATTCAGCTATCCGGTGAAGATCATGAATGG 1628
Query 1566 TGGTGGAGGTCGATATTGTGTGGAGGATTCTCAGCGGTCTTCATGTATGCGTATGGAGTA 1625
|||||||| ||||||||||| ||||||||| ||||||| |||||||||| ||||||||||
Sbjct 1629 TGGTGGAGATCGATATTGTGCGGAGGATTCACAGCGGTGTTCATGTATGGGTATGGAGTA 1688
Query 1626 TTGTTCTATCTCAGGTCTGACATGACTGGATTTCTGCAGCTGAGCTTTTACTTAGGATAT 1685
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1689 TTGTTCTATCTCAGGTCAGACATGACTGGATTTCTGCAGCTGAGCTTTTACTTAGGATAC 1748
Query 1686 ACTGCTTTGTTCTGTTACGCTCTCTTCTTGGTTCTTGGAACCATAAGTTTCTTGGCTTCT 1745
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1749 ACTGCTTTGTTATGTTACGCCCTCTTCTTGGTTCTTGGAACCATAAGTTTCTTGGCTTCT 1808
Query 1746 TTGATGTTTATTCGCCACATCTATCGTTCTGTCAAGGTTGAATAACTCC-AAGAACTAA 1803
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1809 TTGATGTTTATTCGCCACATCTATCGTTCTGTCAAGCTTGAATAACTCCCAAGAACTAA 1867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89557772280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5