BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919580
Length=694
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08360.1 | Symbols: | Ribosomal protein L1p/L10e family | c... 1120 0.0
AT5G22440.1 | Symbols: | Ribosomal protein L1p/L10e family | c... 603 9e-172
> AT1G08360.1 | Symbols: | Ribosomal protein L1p/L10e family |
chr1:2636011-2637915 FORWARD LENGTH=949
Length=949
Score = 1120 bits (606), Expect = 0.0
Identities = 660/687 (96%), Gaps = 0/687 (0%)
Strand=Plus/Plus
Query 1 GCTAAATTGAGACAAGCTCAAAATGAGTAAGCTTCAGAGTGAGGCCGTGAGAGAAGCCAT 60
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 56 GCTAAATTGAGACAAGCTCAAAATGAGTAAGCTTCAGAGTGAGGCCGTTCGTGAAGCCAT 115
Query 61 CACTATTATCACAGGTAAATCCGATGCAAAGAAACGTAACTTTGTGGAGACTGTTGAGCT 120
||||| ||||||||| |||||||| |||||||||||||||||||| |||||| |||||||
Sbjct 116 CACTACTATCACAGGGAAATCCGAGGCAAAGAAACGTAACTTTGTCGAGACTATTGAGCT 175
Query 121 CCAGATCGGTCTGAAGAACTATGATCCTCAGAAGGACAAGCGTTTCAGTGGATCTGTCAA 180
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 176 CCAGATCGGTCTGAAGAACTATGACCCTCAAAAGGACAAGCGTTTCAGTGGATCTGTCAA 235
Query 181 GTTACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAACATGT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 236 GTTACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGT 295
Query 241 TGAAGAGGCTGAGAAAATGGGACTGGAAAATATGGATGTTGAGTCTCTAAAAAAGCTTAA 300
||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 296 TGAAGAGGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTTAA 355
Query 301 CAAAAACAAGAAACTCGTCAAGAAGCTTGCAAAGAAATACCATGCTTTCTTGGCCTCTGA 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CAAGAACAAGAAACTCGTCAAGAAGCTTGCAAAGAAATACCATGCTTTCTTGGCCTCTGA 415
Query 361 GTCTGTCATTAAGCAGATTCCACGTCTTCTTGGTCCTGGTCTCAACAAGGCAGGAAAGTT 420
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 416 GTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGGAAAATT 475
Query 421 CCCAACTCTTGTGAGCCACCAGGAATCCTTAGAGTCAAAGGTGAATGAAACAAAGGCAAC 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 476 CCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGAATGAAACAAAGGCAAC 535
Query 481 AGTGAAATTCCAGCTGAAGAAGGTTCTGTGCATGGGAGTTGCAGTTGGTAACCTTTCAAT 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AGTGAAGTTCCAGCTGAAGAAGGTTCTGTGCATGGGAGTTGCAGTTGGTAACCTTTCAAT 595
Query 541 GGAAGAGAAGCAGATTTTTCAGAATGTTCAGATGAGTGTCAACTTCCTCGTCTCGCTATT 600
||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 596 GGAAGAGAAGCAGATCTTTCAGAATGTGCAGATGAGCGTCAACTTCCTCGTCTCGCTATT 655
Query 601 GAAGAAGAACTGGCAAAATGTCAGGTGTTTGTACCTCAAGAGCACAATGGGACCACCACA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GAAGAAGAACTGGCAAAATGTCAGGTGTTTGTACCTCAAGAGCACAATGGGACCACCACA 715
Query 661 AAGAATCTTCTGAGCTCTCGCCAACTT 687
|||||||||||||||| || || ||||
Sbjct 716 AAGAATCTTCTGAGCTTTCACCTACTT 742
> AT5G22440.1 | Symbols: | Ribosomal protein L1p/L10e family |
chr5:7435076-7436686 REVERSE LENGTH=996
Length=996
Score = 603 bits (326), Expect = 9e-172
Identities = 549/654 (84%), Gaps = 25/654 (4%)
Strand=Plus/Plus
Query 19 CAAAATGAGTAAGCTTCAGAGTGAGGCCGTGAGAGAAGCCATCA-CT--ATTATCA--CA 73
|||||||||||||||||||||||| ||||||||||| || || | || ||||||| ||
Sbjct 87 CAAAATGAGTAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA 146
Query 74 -GGTAAATCCGATG-CAAAGAAACGTAACTT-TGTGGAGACTGTTGAGCTCCAGATCGGT 130
|| || || | ||||| ||| ||||| | |||||| |||| |||||||| |||
Sbjct 147 CTGT-AA--GGA-GACAAAGCCACGCAACTTCACT-GAGACTATTGAACTCCAGATTGGT 201
Query 131 CTGAAGAACTATGATCCTCAGAAGGACAAGCG-TTTCAGTGGATCTGTCAAGTTACCACA 189
|| ||||||||||| ||||| ||||||||| | ||| || || ||||| || || || ||
Sbjct 202 CTCAAGAACTATGACCCTCAAAAGGACAAGAGATTT-AGCGGTTCTGTGAAATTGCCTCA 260
Query 190 TATCCCCCGTCCTAAA-ATGAAGATCTGCATGCTCGGAGATGCCCAACATGTTGAAGAGG 248
| || | || ||| |||||||| |||||||| || |||||||| || || |||||||
Sbjct 261 CGTTCCTAGGCC-AAAGATGAAGATTTGCATGCTTGGTGATGCCCAGCACGTCGAAGAGG 319
Query 249 CTGAGAAAATGGGACTGGAAAATATGGATGTTG-AGTCTCTAAAAAAGCTT-AACAAAAA 306
||||||| || ||| ||||| ||||||||||| || |||| || ||| || ||||| ||
Sbjct 320 CTGAGAAGATTGGATTGGAATCTATGGATGTTGAAG-CTCTTAAGAAG-TTGAACAAGAA 377
Query 307 CAAGAAACTCGTCAAGAAGCTTGCAAAGAAATACCATGCTTT-CTTGGCCTCTGAGTCTG 365
||||||||| || ||||||||||| ||||||| ||||||||| ||| || ||||| ||||
Sbjct 378 CAAGAAACTTGTTAAGAAGCTTGCTAAGAAATTCCATGCTTTCCTT-GCTTCTGAATCTG 436
Query 366 TCATTAAGCAGATTCCACGTCTTCTTGGTCCTGGTCTCAACAAGGCAGGAAAGTTCCCAA 425
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 437 TCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTCAACAAGGCAGGAAAATTCCCAA 496
Query 426 CTCTTGTGAGCCACCAGGAATCCTTAGAGTC-AAAGGTGAATGAAACAAAGGCAACAGTG 484
||||||| |||||||| || || || || || |||| ||||||| |||||||||||||||
Sbjct 497 CTCTTGTTAGCCACCAAGAGTCTTTGGAATCCAAAG-TGAATGAGACAAAGGCAACAGTG 555
Query 485 AAATTCCAGCTGAAGAAGGTTCTGTGCATGGGAGTTGCAGTTGGTAACCTTTCAATGGAA 544
|| |||||||| ||||||||||| || ||||||||||| || ||||| ||||| |||||
Sbjct 556 AAGTTCCAGCTCAAGAAGGTTCTATGTATGGGAGTTGCTGTCGGTAATCTTTCCATGGAG 615
Query 545 GAGAAGCAGATTTTTCAGAATGTTCAGATGAGTGTCAACTTCCTCGTCTCGCTATTGAAG 604
||||||||||| ||||| ||||||||||||||||| ||||||||||| || || ||||||
Sbjct 616 GAGAAGCAGATCTTTCAAAATGTTCAGATGAGTGTTAACTTCCTCGTTTCTCTCTTGAAG 675
Query 605 AAGAACTGGCAAAATGTCAGGTGTTTGTACCTCAAGAGCACAATGGGACCACCA 658
|| |||||||||||||| ||||| |||||| | |||||||||||||| ||||||
Sbjct 676 AAAAACTGGCAAAATGTGAGGTGCTTGTACTTGAAGAGCACAATGGGTCCACCA 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33606644343
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5