BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919585
Length=1794
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08410.1 | Symbols: | P-loop containing nucleoside triphosp... 2785 0.0
AT2G27200.1 | Symbols: | P-loop containing nucleoside triphosp... 1314 0.0
AT3G30122.1 | Symbols: | pseudogene similar to peptide chain r... 52.8 1e-05
> AT1G08410.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:2646189-2649379
FORWARD LENGTH=2161
Length=2161
Score = 2785 bits (1508), Expect = 0.0
Identities = 1710/1805 (95%), Gaps = 23/1805 (1%)
Strand=Plus/Plus
Query 10 GAGAACCAGAGAGATGGGGAAGAGCGAAAAGACGTCGTTAGGGCGATCACTGGTGAAGCA 69
||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 107 GAGAA-CAGAGAGATGGGGAAGAGCGAAAAGACGTCGTTGGGGCGATCACTCGTGAAGCA 165
Query 70 CCACAACCATATGATTCAAGAATCCAAAGACAAAGGCAAGTACTACAAGAATCTTCAGAA 129
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 166 CCACAACCATATGATACAAGAATCCAAAGACAAAGGCAAGTACTACAAGAATCTACAGAA 225
Query 130 GAAAGTTCTCGAATCCGTGACCGAGGTCAGCGACATCGACGCCATCATTGAGCAAGCCGA 189
||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 226 GAAAGTTCTCGAATCTGTGACTGAGGTCAGTGACATCGACGCCATCATTGAGCAAGCTGA 285
Query 190 GGAGGCTGAGCGTCTTTACACCATTAATCACAGCTCCTCCACACCTTTGTCCATCAATCT 249
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 286 GGAGGCAGAGCGTCTTTACACCATTAATCACAGCTCCTCCACACCTTTGTCTATCAATCT 345
Query 250 AGACACAAATTCCAGCTCAAGTGTTATAGCAGCTGAAGAGTGGAGAGAGCAACAGAAGAT 309
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 346 AGACACAAATTCTAGCTCAAGTGTTATAGCAGCTGAAGAATGGAGAGAGCAACAGAAGAT 405
Query 310 AGAGGAGGCTTTACACGCCAGTAGTCTTCAAGTGCCTCGAAGACCTCCGTGGACACCCGA 369
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 406 AGAGGAGGCTTTACACGCCAGTAGTCTTCAAGTACCTCGAAGACCTCCGTGGACACCTGA 465
Query 370 AATGTCAGTAGAAGAACTAGATGCTAATGAAAAACAAGCTTTTCTAAATTGGCGCCGGAT 429
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 466 AATGTCAGTGGAAGAACTTGATGCTAATGAAAAACAAGCTTTTCTAAATTGGCGCCGGAT 525
Query 430 GCTTGTGAGCCTTGAGGAAAATGAAAAGCTTGTGTTGACTCCATTCGAAAAGAACCTTGA 489
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 526 GCTTGTGAGCCTTGAGGAAAATGAAAAGCTAGTGTTGACTCCATTCGAAAAGAACCTTGA 585
Query 490 CATCTGGAGACAGCTTTGGCGAGTGCTTGAACGCAGTGATTTGATTGTTATGGTTGTTGA 549
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 586 CATCTGGAGACAGCTTTGGAGAGTGCTTGAACGCAGTGATTTGATTGTTATGGTAGTTGA 645
Query 550 TGCTAGAGATCCACTGTTTTACCGCTGCCCTGATCTTGAGGCATATGCTCGAGAAATTGA 609
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 646 TGCTAGAGATCCACTGTTTTACCGCTGCCCTGATCTTGAGGCATATGCTCAAGAAATTGA 705
Query 610 TGAACATAAGAAAATAATGCTTCTAGTTAACAAGGCGGATCTTTTACCTACTGATGTCAG 669
||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 706 TGAGCATAAAAAAATAATGCTTCTAGTGAACAAGGCGGATCTTTTACCTACTGATGTCAG 765
Query 670 GGAGAAATGGGCAGAGTATTTCCGCCTTAACAACATTCTGTTTGTTTTCTGGTCAGCCAT 729
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 GGAGAAATGGGCAGAATATTTCCGCCTTAACAACATTCTGTTTGTTTTCTGGTCAGCCAT 825
Query 730 AGCTGCTACAGCTACCCTAGAAGGTAAAGTCTTGAAAGAGCAATGGAGACAACCCGATAA 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 AGCTGCTACAGCTACCCTAGAAGGTAAAGTCTTGAAAGAGCAATGGAGACAACCCGATAA 885
Query 790 CTTTCAGAAGACAGATGATCCAGACATTATGATATATGGCCGGGACGAGCTGCTGAGTCG 849
||| |||||||||||||||||||||||||||||||||||| | ||||||||| |||||||
Sbjct 886 CTTGCAGAAGACAGATGATCCAGACATTATGATATATGGCAGAGACGAGCTGTTGAGTCG 945
Query 850 TTTAG-AATTTGAGGCTCTAGAGATTGTCAAAGTAAGGAATTCTAGAGCAGCATC-G-A- 905
||| | |||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 946 TTT-GCAATTTGAGGCTCAAGAGATTGTCAAAGTAAGGAATTCTAGAGCAGCATCCGTAT 1004
Query 906 C-T----GT--TG-A------A-TATCAACGTGATCAAGCCGTGGTTGGATTTGTTGGGT 950
| | || || | | |||||||||||||||||||||||||||||||||||||
Sbjct 1005 CATCACAGTCATGGACTGGTGAATATCAACGTGATCAAGCCGTGGTTGGATTTGTTGGGT 1064
Query 951 ACCCAAATGTTGGAAAGAGTTCAACAATCAACGCATTGGTGGGTCAGAAGCGAACAGGTG 1010
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1065 ACCCAAATGTTGGAAAGAGTTCTACAATCAATGCATTGGTGGGTCAGAAGCGAACAGGTG 1124
Query 1011 TCACCTCTACCCCAGGAAAAACAAAGCATTTCCAGACTCTGATAATCTCTGAGGAGCTTA 1070
|||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||
Sbjct 1125 TCACCTCTACCCCAGGAAAAACAAAGCATTTCCAGACTTTGATCATCTCTGATGAGCTTA 1184
Query 1071 TGCTATGCGATTGCCCTGGTTTAGTCTTCCCTTCGTTCTCAAGCTCGAGATATGAAATGA 1130
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1185 TGCTATGCGATTGCCCTGGTTTAGTCTTCCCTTCGTTCTCAAGCTCAAGATATGAAATGA 1244
Query 1131 TTGCTTCTGGTGTCCTTCCGATTGACAGGATGACGGAGCACCGTGAAGCTATTCAGGTGG 1190
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1245 TTGCTTCTGGTGTACTTCCGATTGACCGGATGACGGAGCACCGTGAAGCTATTCAGGTGG 1304
Query 1191 TGGCTGACAAGGTTCCTCGACGTGTCATTGAGAGTGTATACAACATTTCTCTTCCTAAAC 1250
||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1305 TGGCTGACAAGGTCCCTCGCCGTGTAATTGAGAGTGTGTACAACATTTCTCTTCCTAAAC 1364
Query 1251 CCAAAACCTATGAGCGTCAGTCCCGCCCGCCTCATGCTGCAGAACTTTTAAGAAGTTACT 1310
||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||
Sbjct 1365 CCAAAACCTATGAGCGTCAGTCCCGCCCGCCTCATGCTGCAGAGCTCTTAAAAAGTTACT 1424
Query 1311 GTGCTTCTCGTGGCTATGTTGCCTCTAGTGGACTACCTGATGAAACGAAAGCTGCTAGGC 1370
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 1425 GTGCTTCTCGTGGCTATGTTGCCTCGAGTGGACTACCGGATGAAACGAAAGCTGCAAGGC 1484
Query 1371 TGATTCTGAAAGATTACATTGGAGGTAAGCTGCCGCATTATGCAATGCCACCTGGAATGA 1430
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1485 TGATTCTGAAAGATTACATTGGAGGTAAGCTGCCACATTATGCAATGCCACCTGGAATGC 1544
Query 1431 CACAAGGTGATGAAGCGGATATAGAGGACACTGAAGAACTTGAGGATATTCTCGAAGGTT 1490
| |||| ||||||| |||| ||||| |||||| ||||||| |||||||||||||||||||
Sbjct 1545 CCCAAGCTGATGAACCGGACATAGAAGACACTCAAGAACTGGAGGATATTCTCGAAGGTT 1604
Query 1491 CAGAGTCTGAAGACTCAACAGTAGGAGATGAGACAGAAAGCGAGCAAGTTCCTGGTATTG 1550
||||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1605 CAGAGTCCGATGACTCTGCAGTAGGAGATGAGACAGAAAACGAGCAAGTTCCTGGTATTG 1664
Query 1551 ATGCTGTGCTAGATGATCTGAGCTCGTTTGATCTTGCCAATGGGCTTAAGTCTTCAAAGA 1610
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 ATGATGTGCTAGATGATCTGAGCTCGTTTGATCTTGCCAATGGGCTTAAGTCTTCAAAGA 1724
Query 1611 AAGTGACAGCGAAGAAGCAAACCGCGTCACATAAACAGCACAAAAAGCCACAGAGGAAAA 1670
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 AAGTGACAGCAAAGAAGCAAACCGCGTCACATAAACAGCACAAAAAGCCACAGAGGAAAA 1784
Query 1671 AGGATCGGACTTGGAGGGTTCAAAACACAGAAGATGGAGATGGGATGCCTA-TGGTTAAA 1729
||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 1785 AGGATCGGACTTGGAGGGTTCAAAACACAGAAGATGGAGATGGAATGCCTTCTG-TTAAA 1843
Query 1730 GTTTTCCAGAAACCGGCTAACACGGGGCCTCTCACGATGCGTTGATTAGCAAATTGTAGT 1789
|||||||||||||| |||||||| || ||||| |||||||| |||||| |||||||||||
Sbjct 1844 GTTTTCCAGAAACCAGCTAACACAGGTCCTCTTACGATGCGGTGATTATCAAATTGTAGT 1903
Query 1790 TCATC 1794
||||
Sbjct 1904 CCATC 1908
> AT2G27200.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:11625417-11628189
FORWARD LENGTH=1876
Length=1876
Score = 1314 bits (711), Expect = 0.0
Identities = 1213/1451 (84%), Gaps = 52/1451 (4%)
Strand=Plus/Plus
Query 23 ATGGGGAAGAGCGA-AAAGACGTCGT-TAGGGCGATCAC-TGGTGAAGCACCACAACCAT 79
|||||||||| ||| ||| || || | |||| ||| | | | ||||||||||| ||||||
Sbjct 33 ATGGGGAAGAACGAGAAA-ACATC-TCTAGGTCGAGC-CTTAGTGAAGCACCATAACCAT 89
Query 80 ATGATTCAAGAATCCAAAGACAAAGGCAAGTACTAC-AAGAATCTTCAGAAGAAAGTTCT 138
||||| || ||| |||| || |||||||| | |||| ||| ||| || ||||| |||||
Sbjct 90 ATGATCCAGGAAACCAAGGAAAAAGGCAAATCCTACAAAG-ATCAACACAAGAAGGTTCT 148
Query 139 CGAATCCGTGACCGAGGTCAGCGACATCGACGCCATCATTGAGCAAGCCGAGGAGGCTGA 198
|||||||||||||| |||||||||||||| |||||||| || |||||||| || |||||
Sbjct 149 AGAATCCGTGACCGAAGTCAGCGACATCGATGCCATCATCGAACAAGCCGAAGAAGCTGA 208
Query 199 GCGTCTTTACACCATTAATCACAG-CTCCTCCACACCTTTGTCC-ATCAATCTAGACACA 256
||||||| | | ||| ||||| | ||| | || ||| | ||| |||||| | || |||
Sbjct 209 ACGTCTTTTCGCGATTCATCAC-GATTCCGCAACTCCTGT-TCCTATCAATATGGATACA 266
Query 257 AATTCCAGCTCAAGTGTTATAGCAGCTGAAGAGTGGAGAGAGCAACA-GAAGATAGAGGA 315
||| || || |||| ||| ||||| |||| |||| ||||||| | || || ||| ||
Sbjct 267 GGTTCGAGTTCGAGTGGCATAACAGCTAAAGAATGGAAAGAGCAA-AGGATGAGAGAAGA 325
Query 316 GGCTTTACACGCCAGTAGTCTTCAAGTGCCTCGAAGACCTCCGTGGACACCCGAAATGTC 375
||||||||| || |||||||||||||| ||||| ||||||| |||||||| |||||
Sbjct 326 GGCTTTACATGCTAGTAGTCTTCAAGTTCCTCGTAGACCTCATTGGACACCTAAAATG-A 384
Query 376 A-GTAGAAG-AACTAGATGCTAATGAAAAACAAGCTTTTCTAAATTGGCGCCGGATGCTT 433
| || | || |||| |||||||||||||||||||||||||| | |||||| |||| |||
Sbjct 385 ATGT-GGAGAAACTTGATGCTAATGAAAAACAAGCTTTTCTCACTTGGCGACGGAAACTT 443
Query 434 GTGAGCCTTGAGGAAAATGAAAAGCTTGTGTTGACTCCATTCGAAAAGAACCTTGACATC 493
| |||||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 444 GCGAGCCTCGAGGAAAATGAAAAGCTTGTGTTGACACCATTCGAGAAGAACCTTGATATC 503
Query 494 TGGAGACAGCTTTGGCGAGTGCTTGAACGCAGTGATTTGATTGTTATGGTTGTTGATGCT 553
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 504 TGGAGACAACTTTGGCGAGTGCTTGAACGTAGTGATTTGATTGTTATGGTTGTTGATGCT 563
Query 554 AGAGATCCACTGTTTTACCGCTGCCCTGATCTTGAGGCATATGCTCGAGAAATTGATGAA 613
|||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 564 AGAGATCCTCTGTTTTACCGCTGCCCTGATCTTGAGGCATATGCACAAGAAATTGATGAG 623
Query 614 CATAAGAAAATAATGCTTCTAGTTAACAAGGCGGATCTTTTACCTACTGATGTCAGGGAG 673
||||| |||| ||||||||| || |||||||| ||||| |||||| || |||||||||||
Sbjct 624 CATAAAAAAACAATGCTTCTGGTCAACAAGGCAGATCTGTTACCTTCTTATGTCAGGGAG 683
Query 674 AAATGGGCAGAGTATTTC-CGCCTTAACAACATTCTGTTTGTTTTCTGGTCAGCCATAGC 732
|||||||| || || ||| | || ||||| ||||||||||| ||||||||||||| |||
Sbjct 684 AAATGGGCGGAATACTTCTC-CCGCAACAATATTCTGTTTGTCTTCTGGTCAGCCAAAGC 742
Query 733 TGCTACAGCTACCCTAGAAGGTAAAGTCTTGAAAGAGCAATGGAGA-CAACCCGATAACT 791
|||||| |||||||||||||||||| | ||||||| || |||||| || || |||| |
Sbjct 743 TGCTACGGCTACCCTAGAAGGTAAACCCCTGAAAGAACAGTGGAGAGCA-CCTGATACCA 801
Query 792 TTCAGAAGACAGATGATCCAGACAT-T-AT-GATATATGGCCGGGACGAGCTGCTG-AGT 847
|||||||||||| | |||| | | | | | ||||||| ||||||| || || | |
Sbjct 802 CACAGAAGACAGATAACCCAG-C-TGTGAAAG-TATATGGAAGGGACGACCTTTTGGA-T 857
Query 848 CGTTTAGAATTTGAGGCTCTAGAGATTGTCAAAGTAAGGAATTCTAGAGCAGCATC-G-A 905
|| ||| || |||||||||||||||| || ||| | ||||| ||||||| || || | |
Sbjct 858 CGATTAAAACTTGAGGCTCTAGAGATAGTAAAAATGAGGAAATCTAGAGGAGTTTCCGCA 917
Query 906 -CTG-T--TGAAT-ATCAAC-GTGATCAAGCCGTGGTTGGATTTGTTGGGTACCCAAATG 959
|| | ||||| | || | | || |||| |||||||| |||||||||||||| ||||
Sbjct 918 ACTTCTACTGAATCA-CA-CTGCGAACAAGTTGTGGTTGGCTTTGTTGGGTACCCGAATG 975
Query 960 TTGGAAAGAGTTCAACAATCAACGCATTGGTGGGTCAGAAGCGAACAGGTGTCACCTCTA 1019
| || |||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||
Sbjct 976 TGGGGAAGAGTTCGACAATCAACGCATTGGTAGGTCAGAAGCGAACTGGTGTCACATCTA 1035
Query 1020 CCCCAGGAAAAACAAAGCATTTCCAGAC-TCTGATAATCTCTGAGGAGCTTATGCTATGC 1078
|||| || |||||||||||||||||||| | |||||||||||||||| || ||||| |||
Sbjct 1036 CCCCCGGGAAAACAAAGCATTTCCAGACAT-TGATAATCTCTGAGGATCTAATGCTCTGC 1094
Query 1079 GATTGCCCTGGTTTAGTCTTCCCTTCGTTCTCAAGCTCGAGATATGAAATGATTGCTTCT 1138
|||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||
Sbjct 1095 GATTGCCCTGGTTTAGTCTTCCCTTCATTCTCAAGCTCAAGATATGAAATGGTTGCTTCT 1154
Query 1139 GGTGTCCTTCCGATTGACAGGATGACGGAGCACCGTGAAGCTATTCAGGTGGTGGCTGA- 1197
|| || ||||| || ||| ||||||| ||||||| |||||||||| |||| ||||||||
Sbjct 1155 GGAGTTCTTCCAATAGACCGGATGACCGAGCACCTTGAAGCTATTAAGGTTGTGGCTGAA 1214
Query 1198 CAAGGTTCCTCGACGTGTCATTGAG-AGTGTATACAACATTTCTCTTCCTAAACCCAAAA 1256
| | ||||||||| || ||||||| | ||| |||||||| ||||| ||||||||||||
Sbjct 1215 CTTG-TTCCTCGACATGCCATTGAGGA-TGTGTACAACATCTCTCTACCTAAACCCAAAT 1272
Query 1257 CCTATGAGCGTCAGTCCCGCCCGCCTCATGC-TGCAGAACTTTTAAGAAGTTACTGTGCT 1315
||||||| | |||||||||||| |||| ||| | |||| ||| |||||| |||||| ||
Sbjct 1273 CCTATGAACCTCAGTCCCGCCCACCTCTTGCCT-CAGAGCTTCTAAGAACTTACTGC-CT 1330
Query 1316 -TCTCGTGGCTATGTTGCCTCTAGTGGACTACCTGATGAAACGAAAGCTGCTAGGCTGAT 1374
|||||||| ||||||||||||||||||||||||||||| || | ||| ||||||| |||
Sbjct 1331 CTCTCGTGGTTATGTTGCCTCTAGTGGACTACCTGATGAGACTAGAGCAGCTAGGCAGAT 1390
Query 1375 TCTGAAAGATTACATTGGAGGTAAGCTGCCGCATTATGCAATGCCACCTG-GAATGACAC 1433
||||||||||||||||| ||||||||| || |||| ||||||||| || | || | || |
Sbjct 1391 TCTGAAAGATTACATTGAAGGTAAGCTTCCACATTTTGCAATGCCTCCAGAGA-TAACCC 1449
Query 1434 AAGGTGATGAA 1444
|| |||||||
Sbjct 1450 GAGATGATGAA 1460
> AT3G30122.1 | Symbols: | pseudogene similar to peptide chain
release factor protein | chr3:11758491-11760858 REVERSE LENGTH=2368
Length=2368
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 250 AGACACAAATTCCAGCTCAAGTGTTATA 277
||||||||||||||||||||||||||||
Sbjct 357 AGACACAAATTCCAGCTCAAGTGTTATA 384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88754563560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5