BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919589
Length=1312
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08450.1 | Symbols: CRT3, PSL1, EBS2, AtCRT3 | calreticulin ... 2132 0.0
> AT1G08450.1 | Symbols: CRT3, PSL1, EBS2, AtCRT3 | calreticulin
3 | chr1:2667825-2671832 REVERSE LENGTH=1490
Length=1490
Score = 2132 bits (1154), Expect = 0.0
Identities = 1253/1301 (96%), Gaps = 5/1301 (0%)
Strand=Plus/Plus
Query 17 aaaaaTGGGATTACCTCAAAATAAGCTCAGTTTTCTCTGC--C-TCTTTCTCTTCTCTGT 73
|||||||||||||||||||||||||||||||||| ||||| | |||| ||| |||||||
Sbjct 29 AAAAATGGGATTACCTCAAAATAAGCTCAGTTTTTTCTGCTTCTTCTTCCTCGTCTCTGT 88
Query 74 GCTCACTATTGCTCCGTTGGCTTTCTCCGAGATCTTCTTAGAAGAGCATTTCGAAGGTGG 133
|| ||| |||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 89 ACTAACTCTTGCCCCATTGGCTTTCTCCGAGATCTTCTTAGAGGAGCATTTCGAAGGTGG 148
Query 134 ATGGAAAAGTAGGTGGGTCTTGTCTGATTGGAAAAGAAACGAAGGCAAAGCTGGAACCTT 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 ATGGAAAAGTAGGTGGGTCTTGTCTGATTGGAAAAGAAACGAAGGCAAAGCTGGAACCTT 208
Query 194 TAAGCACACTGCCGGTAAATGGCCCGGCGATCCTGACGATAAAGGTATTCAGACCTATAA 253
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 209 TAAGCACACTGCCGGTAAATGGCCCGGCGATCCTGACAATAAAGGTATTCAGACTTATAA 268
Query 254 TGATGCCAAGCATTATGCGATCTCTGCAAAGATTCCTGAGTTTAGCAACAAAAACCGGAC 313
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 269 TGATGCCAAGCATTATGCGATTTCTGCAAAGATTCCTGAGTTTAGCAACAAAAACCGGAC 328
Query 314 TCTTGTTGTCCAGTACTCAGTCAAGATTGAACAAGATATAGAATGTGGTGGTGCTTACAT 373
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 329 TCTTGTTGTCCAGTACTCAGTCAAGATTGAACAAGACATTGAATGTGGTGGTGCTTACAT 388
Query 374 CAAGCTCCTCTCTGGCTATGTTAACCAGAAGCAGTTTGGTGGTGATACTCCTTACAGTCT 433
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 389 TAAGCTCCTGTCTGGCTATGTTAACCAGAAGCAGTTTGGTGGTGATACTCCATACAGTCT 448
Query 434 AATGTTTGGACCAGATATATGCGGAACACAGACGAAGAAACTTCATGTTATACTTTCATA 493
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 449 AATGTTTGGACCAGATATATGCGGAACACAGACGAAGAAGCTTCATGTTATAGTTTCATA 508
Query 494 TCAGGGACAGAATTATCCAATCAAAAAGGATTTGCAATGTGAAACAGACAAATTAAATCA 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 TCAGGGACAGAATTATCCAATCAAAAAGGATTTGCAATGTGAAACAGACAAATTAAATCA 568
Query 554 TTTCTACACATTTATTCTGCGGCCTGACGCTTCTTACAGCGTTCTGGTGGACAATAAAGA 613
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 569 TTTCTACACATTTATTCTGCGTCCTGACGCTTCTTACAGCGTTCTGGTGGATAATAAAGA 628
Query 614 GAGAGAATTTGGTAGTATGTACACAGACTGGGACATCCTTCCTCCAAGGAAGATAAAGGT 673
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 629 GAGAGAATTTGGCAGTATGTACACAGACTGGGACATCCTTCCTCCAAGGAAGATCAAGGT 688
Query 674 CAAGAATGCAAAGAAGCCAGAGGACTGGGATGATAGAGAGTACATCGATGACCCCAACGA 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 CAAGAATGCAAAGAAGCCAGAGGACTGGGATGATAGAGAGTACATCGATGACCCCAACGA 748
Query 734 TGTCAAACCCGAGGGTTTTGATTCTATTCCGCGTGAAATTCCAGATCGTAAAGCTAAAGA 793
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 749 TGTCAAACCCGAGGGTTTTGATTCTATTCCACGTGAAATTCCAGATCGTAAAGCTAAAGA 808
Query 794 GCCCGAGGACTGGGACGAGGAAGAAAACGGTCTCTGGGAACCTCCAAAGATCCCAAATCC 853
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 809 GCCCGAGGACTGGGACGAGGAAGAAAATGGTCTCTGGGAACCTCCAAAGATCCCAAATTC 868
Query 854 TGCATACAAAGGTCCTTGGAAAGCAAAGAAAATCAAGAACCCGAACTACAAGGGAAAATG 913
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 869 TGCGTACAAAGGTCCTTGGAAAGCAAAGAGAATCAAGAACCCGAACTACAAGGGAAAATG 928
Query 914 GAAAAACCCATGGATAGATAATCCAGAATTTGAAGATGATCCAGATCTTTACGTTCTGAA 973
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 GAAGAACCCATGGATAGATAATCCAGAATTTGAAGATGATCCAGATCTTTACGTTCTGAA 988
Query 974 GCCTATAAAATATGCAGGCATTGAAGTATGGCAGGTGAAGGCTGGCTCTATCTTTGACAA 1033
| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 989 GTCTATCAAATATGCAGGCATTGAAGTATGGCAGGTGAAGGCTGGCTCAATCTTTGACAA 1048
Query 1034 TATCTTGATCTGCGATGACCCGGAATATGCTAGAAGCATCGTGGATGACTATTTTGCCCA 1093
||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1049 TATATTGATCTGCGATGACCCGGCATATGCAAGAAGCATCGTGGATGACTATTTTGCCCA 1108
Query 1094 GCACAGGGAGTCTGAGAAGGAGTTATTTGCggaagctgagaaagaaagaaaagctagaga 1153
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1109 ACACAGGGAGTCTGAGAAGGAGTTATTTGCGGAAGCAGAGAAAGAAAGAAAAGCTAGAGA 1168
Query 1154 agatgaggaagctcggaaagcacgggaagaagGTGAACGCAGGCGGAAGGAAAGGGACCA 1213
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1169 AGATGAGGAAGCTCGGATAGCACGGGAAGAAGGTGAACGCAGGCGGAAAGAAAGGGACCA 1228
Query 1214 CCGGTATGGAGACAGGAGGAGGCGTTACAAACGACCGAATCCACGTGATTACATGGATGA 1273
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1229 CCGGTATGGAGACAGGAGGAGGCGTTACAAACGGCCGAATCCACGTGATTATATGGATGA 1288
Query 1274 TTACCATGACGAGCTGTAAGGCGCAG--TGGTGGGCATTTG 1312
||||||||||||||| | |||||||| |||||||||||||
Sbjct 1289 TTACCATGACGAGCTATGAGGCGCAGAGTGGTGGGCATTTG 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64557900870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5