BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919594

Length=469
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G08480.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   743    0.0  


> AT1G08480.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion, plasma membrane, plastid, vacuole; 
EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 
15 growth stages; Has 39 Blast hits to 39 proteins in 13 species: 
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants 
- 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 
| chr1:2684234-2685621 FORWARD LENGTH=761
Length=761

 Score =  743 bits (402),  Expect = 0.0
 Identities = 442/462 (96%), Gaps = 0/462 (0%)
 Strand=Plus/Plus

Query  1    GATAAATCGATCTGAGAAAGATGGGAGATTCGGAGTCATTTGTTGGCAAAAATTGGAATG  60
            ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  87   GATTAATCGATCTGAGAAAGATGGGAGATTCGGAGTCATTTGTTGGGAAAAATTGGAATG  146

Query  61   GATTCAAGGATTTCTGGAGTGATAGGTTATCTTTTTTCGATAATTACACCAGATTCACCA  120
            |||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct  147  GATTGAAGGATTTCTGGAGTGATAGGTTATCATTTTTCGAAAATTACACCAGATTCACCA  206

Query  121  AACGCGACTCGCCTCTTCCTTCTTGGTCTTCCTCCGACGTCGACGAATTCATTGCCTCCG  180
            |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  207  AACGCGACGCGCCTCTTCCTTCTTGGTCTTCCTCCGACGTCGAGGAATTCATTGCCTCCG  266

Query  181  ATCCTTTTCATGGACCCACCCTGAAAACTGCTAGGGATGCTGTGACCTTTGGTGTTACTG  240
            ||||  |||||||||||||||||||||| |||||||| |||||||| ||||||||||| |
Sbjct  267  ATCCCGTTCATGGACCCACCCTGAAAACGGCTAGGGAAGCTGTGACGTTTGGTGTTACCG  326

Query  241  GCGCTGCACTTGGAGCTGTCTCTACTGCTGCTTTTGCCTGGAAATACTCCAGGAGTCCTC  300
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  327  GAGCTGCACTTGGAGCTGTCTCTACTGCTGCTTTTGCCTGGAAATACTCCAGGAGTCCAC  386

Query  301  ATGGTGCTGCATTGTCCTTCTTAGGAGGAGGTGTTTTTGGTTGGACCTTTGGGCAAGAGG  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  387  ATGGTGCTGCATTGTCCTTCTTAGGAGGAGGTGTTTTTGGTTGGACCTTTGGGCAAGAGG  446

Query  361  TTGCCAACCACACACTGCAACTCTATAAGTTGGACACTATGGCAGCCCAAGTTAAGTTCT  420
            | ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| 
Sbjct  447  TCGCCAACCACACACTGCAACTCTACAAGTTGGACACAATGGCAGCCCAAGTTAAGTTCA  506

Query  421  TGGAATGGTGGGAACGTAAGTCTCAATGAAGGTCCTGAATCT  462
            ||||||||||||||||||||||||||| ||||||||||||||
Sbjct  507  TGGAATGGTGGGAACGTAAGTCTCAATAAAGGTCCTGAATCT  548



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22303961268


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5