BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg919594 Length=469 Score E Sequences producing significant alignments: (Bits) Value AT1G08480.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 743 0.0 > AT1G08480.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:2684234-2685621 FORWARD LENGTH=761 Length=761 Score = 743 bits (402), Expect = 0.0 Identities = 442/462 (96%), Gaps = 0/462 (0%) Strand=Plus/Plus Query 1 GATAAATCGATCTGAGAAAGATGGGAGATTCGGAGTCATTTGTTGGCAAAAATTGGAATG 60 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 87 GATTAATCGATCTGAGAAAGATGGGAGATTCGGAGTCATTTGTTGGGAAAAATTGGAATG 146 Query 61 GATTCAAGGATTTCTGGAGTGATAGGTTATCTTTTTTCGATAATTACACCAGATTCACCA 120 |||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 147 GATTGAAGGATTTCTGGAGTGATAGGTTATCATTTTTCGAAAATTACACCAGATTCACCA 206 Query 121 AACGCGACTCGCCTCTTCCTTCTTGGTCTTCCTCCGACGTCGACGAATTCATTGCCTCCG 180 |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 207 AACGCGACGCGCCTCTTCCTTCTTGGTCTTCCTCCGACGTCGAGGAATTCATTGCCTCCG 266 Query 181 ATCCTTTTCATGGACCCACCCTGAAAACTGCTAGGGATGCTGTGACCTTTGGTGTTACTG 240 |||| |||||||||||||||||||||| |||||||| |||||||| ||||||||||| | Sbjct 267 ATCCCGTTCATGGACCCACCCTGAAAACGGCTAGGGAAGCTGTGACGTTTGGTGTTACCG 326 Query 241 GCGCTGCACTTGGAGCTGTCTCTACTGCTGCTTTTGCCTGGAAATACTCCAGGAGTCCTC 300 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 327 GAGCTGCACTTGGAGCTGTCTCTACTGCTGCTTTTGCCTGGAAATACTCCAGGAGTCCAC 386 Query 301 ATGGTGCTGCATTGTCCTTCTTAGGAGGAGGTGTTTTTGGTTGGACCTTTGGGCAAGAGG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 387 ATGGTGCTGCATTGTCCTTCTTAGGAGGAGGTGTTTTTGGTTGGACCTTTGGGCAAGAGG 446 Query 361 TTGCCAACCACACACTGCAACTCTATAAGTTGGACACTATGGCAGCCCAAGTTAAGTTCT 420 | ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 447 TCGCCAACCACACACTGCAACTCTACAAGTTGGACACAATGGCAGCCCAAGTTAAGTTCA 506 Query 421 TGGAATGGTGGGAACGTAAGTCTCAATGAAGGTCCTGAATCT 462 ||||||||||||||||||||||||||| |||||||||||||| Sbjct 507 TGGAATGGTGGGAACGTAAGTCTCAATAAAGGTCCTGAATCT 548 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22303961268 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5