BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919597
Length=1394
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08510.1 | Symbols: FATB | fatty acyl-ACP thioesterases B | ... 2272 0.0
> AT1G08510.1 | Symbols: FATB | fatty acyl-ACP thioesterases B
| chr1:2691080-2694377 REVERSE LENGTH=2053
Length=2053
Score = 2272 bits (1230), Expect = 0.0
Identities = 1344/1399 (96%), Gaps = 8/1399 (1%)
Strand=Plus/Plus
Query 1 CAGGGAGGCTGCCGAAGAAAGGAGAATTTAGGGTTTGGAGAC-TTTGTAGAAATTTGGCG 59
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 208 CAGAGAGGCTGCCGAAGAAAGGAGAATTTAGGGTTTGGAGACTTTTGTTGAAATTTGGCG 267
Query 60 TTACG-tttttttGTATTTCTTCAA-TTATTTCTCATCTGCCCTCTTCATATTGTGTCTT 117
||||| |||||||||||||| |||| ||||||||||||| ||||||||||||||||||
Sbjct 268 TTACGTTTTTTTTGTATTTCCTCAACAAATTTCTCATCTGCTCTCTTCATATTGTGTCTT 327
Query 118 TGAACGCTTCATCTCCTCGTCATGGTGGCCACCTCTGCTACTTCGTCATTCTTTCCTGTA 177
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 328 TGAACGCTTCATCTCCTCGTCATGGTGGCCACCTCTGCTACGTCGTCATTCTTTCCTGTA 387
Query 178 CCGTCTTCTTCGCTTGATCCTAATGGAAAAGGCAACAAGATTGGTTCCACGAATCTTGCT 237
|| |||||||| ||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 388 CCATCTTCTTCACTTGATCCTAATGGAAAAGGCAATAAGATTGGGTCTACGAATCTTGCT 447
Query 238 GGACTCAATTCTGCACCAAACTCTGGTAGGATGAAGGTTAAACCAAATGCTCAGGCTCCA 297
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 448 GGACTCAATTCTGCACCTAACTCTGGTAGGATGAAGGTTAAACCAAACGCTCAGGCTCCA 507
Query 298 CCTAAGATTAATGGAAAAAAGGTGGGTTTGCCTGGTTCTGTAGATATCGTAAGGACTGAT 357
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 508 CCTAAGATTAATGGGAAAAAGGTTGGTTTGCCTGGTTCTGTAGATATTGTAAGGACTGAT 567
Query 358 ATCGAGA---CGTCACACCCTGCCCCGAGAACTTTCATCAACCAGTTACCTGACTGGAGC 414
| ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 568 ACCGAGACCTCATCACACCCTGCGCCGAGAACTTTCATCAACCAGTTACCTGACTGGAGC 627
Query 415 ATGCTTCTTGCTGCTATAACAACGAtttttttAGCAGCTGAGAAACAGTGGATGATGCTT 474
|||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct 628 ATGCTTCTTGCTGCTATAACTACGATTTTCTTAGCGGCTGAGAAACAGTGGATGATGCTT 687
Query 475 GATTGGAAACCCAGGCGTTCTGACATGCTGGTGGATCCGTTTGGTATAGGGAGAATTGTT 534
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 688 GATTGGAAACCTAGGCGTTCTGACATGCTGGTGGATCCTTTTGGTATAGGGAGAATTGTT 747
Query 535 CAGGATGGCCTTGTGTTCCGTCAGAATTTCTCCATTAGGTCCTATGAAATAGGTGCTGAT 594
||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 748 CAGGATGGCCTTGTGTTCCGTCAGAATTTTTCTATTAGGTCATATGAAATAGGTGCTGAT 807
Query 595 CGCTCTGCATCTATAGAAACCGTCATGAATCATTTGCAGGAAACAGCGCTTAATCATGTT 654
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 808 CGCTCTGCATCTATAGAAACCGTCATGAATCATCTGCAGGAAACGGCGCTTAATCATGTT 867
Query 655 AAGACTGCTGGATTGCTGGGAGATGGGTTTGGCTCTACCCCTGAGATGTTTAAGAAGAAC 714
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 868 AAGACTGCTGGATTGCTTGGAGATGGGTTTGGCTCTACACCTGAGATGTTTAAGAAGAAC 927
Query 715 TTGATATGGGTCGTCACTCGTATGCAGGTTGTGGTTGATAAATATCCTACTTGGGGAGAT 774
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 TTGATATGGGTTGTCACTCGTATGCAGGTTGTGGTTGATAAATATCCTACTTGGGGAGAT 987
Query 775 GTTGTTGAAGTAGACACCTGGGTCAGTCAGTCTGGAAAGAATGGTATGCGTCGTGATTGG 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 GTTGTTGAAGTAGACACCTGGGTCAGTCAGTCTGGAAAGAATGGTATGCGTCGTGATTGG 1047
Query 835 CTAGTTCGGGATTGCAATACTGGAGAAACGTTAACACGAGCATCAAGTGTGTGGGTGATG 894
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1048 CTAGTTCGGGACTGTAATACTGGAGAAACCTTAACACGAGCATCAAGTGTGTGGGTGATG 1107
Query 895 ATGAATAAACTGACAAGGAGATTGTCGAAGATTCCTGAAGAGGTTCGAGGGGAAATAGAG 954
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1108 ATGAATAAACTGACAAGGAGATTGTCAAAGATTCCTGAAGAGGTTCGAGGGGAAATAGAG 1167
Query 955 CCTTATTTTGTGAATTCTGATCCTGTCCTTGCCGAGGACAGCAGAAAGTTAACAAAACTT 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1168 CCTTATTTTGTGAATTCTGATCCTGTCCTTGCCGAGGACAGCAGAAAGTTAACAAAAATT 1227
Query 1015 GATGACAAGACTGCTGACTATGTTCGATCTGGTCTCACTCCGCGATGGAGTGACCTAGAT 1074
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1228 GATGACAAGACTGCTGACTATGTTCGATCTGGTCTCACTCCTCGATGGAGTGACCTAGAT 1287
Query 1075 GTTAACCAGCATGTTAATAATGTAAAGTACATTGGGTGGATCCTGGAGAGTGCTCCAGTG 1134
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 GTTAACCAGCATGTGAATAATGTAAAGTACATTGGGTGGATCCTGGAGAGTGCTCCAGTG 1347
Query 1135 GGAATAATGGAGAGGCAGAAGCTGAAAAGCATGACTCTGGAGTATCGGAGGGAATGTGGA 1194
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1348 GGAATAATGGAGAGGCAGAAGCTGAAAAGCATGACTCTGGAGTATCGGAGGGAATGCGGG 1407
Query 1195 AGAGACAGTGTGCTTCAGTCCCTCACCGCAGTTTCAGGTTGCGATATCGGTAACCTGGCA 1254
|||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct 1408 AGAGACAGTGTGCTTCAGTCCCTCACTGCAGTTACGGGTTGCGATATCGGTAACCTGGCA 1467
Query 1255 ACAGCGGGGGATGTGGAATGTCAGCATTTGCTCCGACTCCAGGATGGAGCGGAAGTGGTG 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1468 ACAGCGGGGGATGTGGAATGTCAGCATTTGCTCCGACTCCAGGATGGAGCGGAAGTGGTG 1527
Query 1315 AGAGGAAGAACAGAGTGGAGTAGTAAAACACCAACAACAACTTGGGGAACTGCACCGTaa 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1528 AGAGGAAGAACAGAGTGGAGTAGTAAAACACCAACAACAACTTGGGGAACTGCACCGTAA 1587
Query 1375 -aaaaa-aaCCCACAACAA 1391
||||| || ||||||||
Sbjct 1588 GAAAAAGAAAACACAACAA 1606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68674345560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5