BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919605

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G08580.1 | Symbols:  | unknown protein; Has 39 Blast hits to...   610    3e-174


> AT1G08580.1 | Symbols:  | unknown protein; Has 39 Blast hits 
to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes 
- 4 (source: NCBI BLink). | chr1:2715079-2716404 REVERSE 
LENGTH=642
Length=642

 Score =  610 bits (330),  Expect = 3e-174
 Identities = 381/406 (94%), Gaps = 1/406 (0%)
 Strand=Plus/Plus

Query  8    GTAGTAGTAGTAAGATGGCCAAGTACAACGAGATCGCGAAGAAGAAGAGAGAGGCTAAAG  67
            |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  41   GTAG-AGTAGTAAGATGGCCAAGTACAACGAGATTGCGAAGAAGAAGAGAGAGGCTAAAG  99

Query  68   CTGATAGAAAACGAGCCATTCACGGCGATCCTCTCACCAATAAATTGAAGACCAGAACTC  127
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  100  CCGATAGAAAACGAGCCATTCACGGCGATCCTCTCACCAATAAATTGAAGACCAGAACTC  159

Query  128  CGGTCCCCTCCGTCTCCGGTAAACGTCAGAGAAAACTCCTCCGCAAATGGCGCCGAGAGC  187
            ||||||||||||||||||| |||||||||||||| ||||| |||||||||||| ||||||
Sbjct  160  CGGTCCCCTCCGTCTCCGGCAAACGTCAGAGAAAGCTCCTTCGCAAATGGCGCAGAGAGC  219

Query  188  AGAAAGAGATGGTGGATAAGGGTCTTGTTACAATGGAAGATGTGGAGATGGCTTCTGCTC  247
            ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct  220  AGAAAGATATGGTGGAGAAGGGTCTTGTTACTATGGAAGATGTGGAGATGGCTTCTGCTC  279

Query  248  AAGCTGCATCAGAAGACTCCAAGAAATCCCCCAAAAAATTCAGCGTaaagaagagcttga  307
            ||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||
Sbjct  280  AAGCTGCATCAGAAGACTCCAAGAAATCCCCCAGAAAATTTAGCGTTAAGAAGAGCTTGA  339

Query  308  agctcaataaactaaagaacaaaggcaaaaagaagaaaagccagaaagcCAGTGGTGAAG  367
            || | || |||||||| || ||||||||||||||||||| ||||||||||||||||||| 
Sbjct  340  AGTTGAACAAACTAAATAATAAAGGCAAAAAGAAGAAAAACCAGAAAGCCAGTGGTGAAA  399

Query  368  CATCTGCCGATTGTATGCTAGAATGAGTGTCCTGTAAACCTGGAAA  413
             |||||| ||||||||||||||||||||||| |||| ||||| |||
Sbjct  400  AATCTGCTGATTGTATGCTAGAATGAGTGTCGTGTATACCTGTAAA  445



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19554154361


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5