BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919613
Length=895
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08650.1 | Symbols: PPCK1, ATPPCK1 | phosphoenolpyruvate car... 1415 0.0
> AT1G08650.1 | Symbols: PPCK1, ATPPCK1 | phosphoenolpyruvate carboxylase
kinase 1 | chr1:2752156-2753703 FORWARD LENGTH=1376
Length=1376
Score = 1415 bits (766), Expect = 0.0
Identities = 851/893 (95%), Gaps = 2/893 (0%)
Strand=Plus/Plus
Query 5 ATTAA-ATAGTGATATTATGACTTGCAGCCAAACACTCGGAAACAACAACGCCAACAAAT 63
||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 34 ATTAAGAAAGTGATATTATGACTTGCAGCCAAACACTCGGAAACAACAACACCAACAAAT 93
Query 64 ACCAGATCTGCGAGGAGATCGGCCGTGGCCGTTTCGGCACCGTCACTCGCGTCTACGCTC 123
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 94 ACCAGATCTGCGAGGAGATCGGCCGTGGCCGTTTCGGCACCGTCTCTCGCGTCTACGCTC 153
Query 124 CGGCCACCGGTGATTTCTTCGCTTGCAAAACCATCGACAAGGCCTCCCTCTCCGACGACC 183
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 154 CGGCCACCGGTGATTTCTTCGCTTGCAAAACCATCGACAAAGCCTCTCTCTCCGACGACC 213
Query 184 TTGACCGCGCCTGTCTCGATAACGAGCCTAAGCTCATGGCTCTCTTGTCCTATCACCCAA 243
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 214 TTGACCGTGCCTGTCTCGACAACGAGCCTAAGCTCATGGCTCTCTTGTCCTATCACCCTA 273
Query 244 ACATCGTCCAAATCCATGATCTCATCGACACTGATTCGACTCTCTCCATTTTCATGGAGC 303
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 274 ACATCGTTCAAATCCATGATCTCATCGACACTGATTCGACTCTCTCCATCTTCATGGAGC 333
Query 304 TTGTTGATCCCTCTGTGTCGATCTACGACCGTCTGGTTTCTTCTGGAACATTCTCTGAGT 363
| || |||||||||| ||||||||||||||||| || ||||||||||| |||| ||||
Sbjct 334 TCGTCCATCCCTCTGTTTCGATCTACGACCGTCTCGTCTCTTCTGGAACCTTCTTTGAGC 393
Query 364 CTCAGACGGCGTCGTTCGCTAAACAGATTCTCCAGGCGCTTTCGCATTGTCACCGATACG 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 CTCAGACGGCGTCGTTCGCTAAACAGATTCTCCAGGCGCTTTCGCATTGTCACCGATACG 453
Query 424 GTGTCGTTCACAGGGATATTAAACCGGAGAACATTTTGGTAGATCTACGAAACGATACGG 483
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 454 GCGTCGTTCACAGGGATATTAAACCGGAGAACATTCTGGTAGATCTACGAAACGATACGG 513
Query 484 TTAAGATCTGCGATTTTGGTTCAGGGATTTGGTTAGGTGACGGAGAGACCACCGAAGGAG 543
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 514 TTAAGATCTGCGATTTCGGTTCAGGGATTTGGTTAGGTGAGGGAGAGACCACCGAAGGAG 573
Query 544 TCGTCGGGACGCCGTATTACGTGGCGCCGGAGGTTTTAATGGGATGTTCTTACGGCGAGA 603
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 574 TCGTCGGAACGCCGTATTACGTGGCGCCGGAGGTTTTAATGGGATATTCTTACGGAGAGA 633
Query 604 AGGTCGATCTCTGGAGCGCCGGCGTCGTTTTGTACACGATGCTCGCAGGAACTCCACCGT 663
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 634 AGGTCGATCTATGGAGCGCCGGCGTCGTTTTGTACACGATGCTCGCTGGAACTCCACCGT 693
Query 664 TTTACGGGGAGACTGCGGAGGAGATATTCGAAGCGGTTCTCAGAGGAAACCTCCGTTTTC 723
||||||| ||||| || || ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 694 TTTACGGCGAGACAGCTGAAGAGATATTCGAAGCGGTACTCAGAGGAAATCTCCGTTTTC 753
Query 724 CGACTAAGATATTCCGGGGAGTTTCATCGATGGCTAAAGATTTCCTAAGGAAGTTGATAT 783
|||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 754 CGACGAAGATATTCCGGGGGGTTTCATCTATGGCTAAAGATTTCCTAAGGAAATTGATAT 813
Query 784 GCAAAGATGCTTCTAGAAGATTCTCAGCCGAACAAGCATTAAGGCACCCATGGATCCAAA 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 GCAAAGATGCTTCTAGAAGATTCTCAGCCGAACAAGCATTAAGGCACCCATGGATCCAAA 873
Query 844 GAGCAGGAGAAACAGAGGAGAGATTCATGTAGAAGAATCTCTCGGAGAA-TAA 895
|||||||||||||||||||||||||||| ||||||| |||||||||||| |||
Sbjct 874 GAGCAGGAGAAACAGAGGAGAGATTCATCTAGAAGATTCTCTCGGAGAAATAA 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43703707890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5