BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919615

Length=1090
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G22340.1 | Symbols:  | unknown protein; Has 56 Blast hits to...   407    1e-112


> AT2G22340.1 | Symbols:  | unknown protein; Has 56 Blast hits 
to 38 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:9492879-9493955 REVERSE LENGTH=1077
Length=1077

 Score =  407 bits (220),  Expect = 1e-112
 Identities = 469/584 (80%), Gaps = 37/584 (6%)
 Strand=Plus/Plus

Query  527   ATTTCTTGTGCCGTTAAAATTGTCTGATGATGGTGATGGTTT-CCCATTACCTTGGTTGG  585
             ||||||| || || ||| ||||||| | ||||||||| |||| | ||||||| |||||||
Sbjct  405   ATTTCTTATGACGCTAACATTGTCTAAAGATGGTGAT-GTTTACTCATTACCATGGTTGG  463

Query  586   AAT-TTTTCGTCTCGTGGATTGATTGTATGGG-TTTAGGATTATATGGTTCCAAAGTTAA  643
             ||| ||| | ||||||  ||||||| |||||| | | ||| |||||||||| ||| | ||
Sbjct  464   AATATTTGC-TCTCGTCTATTGATTCTATGGGATGT-GGAGTATATGGTTCTAAAATGAA  521

Query  644   GGTGATG-ACtttt-ttttATGATGACGATGGTGATTACTTTCCTTGGTCGGAAGCCTTT  701
             ||||  | | |||| ||| | ||||| |||| | |||||||| | ||| ||||||||| |
Sbjct  522   GGTG--GCAATTTTCTTTGAGGATGATGATGTTCATTACTTTTCATGGACGGAAGCCTCT  579

Query  702   CTTTTACCAGAACGAGTTCATCGGTATATTCAATTGACTTGTCTTTGGTA-CAACCCGAA  760
             |||||||| ||| |||   || | | ||||||||||| ||||||||||||  ||||| ||
Sbjct  580   CTTTTACCGGAAGGAG---ATTGTTTTATTCAATTGAATTGTCTTTGGTATAAACCC-AA  635

Query  761   TCAAGTA-ACGAGCGTGATGAGAAGGAAGATGG--TGAAGAGTGATTGTGATGGTGATGT  817
               ||| | |||||||||||| || |||||||||  |  | ||||| |||||| |||||||
Sbjct  636   AGAAG-ACACGAGCGTGATGGGACGGAAGATGGCCT-CA-AGTGACTGTGATAGTGATGT  692

Query  818   TTTCTCTTTCCCGTGGTCGGAAAA-TCACATTTCTATGAAAAGGA-AAATCATGGGT-AC  874
             | |||||||| | | || |||||| | | | | | ||| |||||| ||||||  | | ||
Sbjct  693   TCTCTCTTTCTCTTTGTTGGAAAATTTA-ACTGCAATG-AAAGGAGAAATCA-AGATCAC  749

Query  875   CAACCGACAACGTTGCGTAAGACGTTTCGAGTATATCGTATTGAGTTTCAAAAGACAAGA  934
              ||  | ||||| ||||| ||  ||||| || ||||| ||||||||||||||||||||||
Sbjct  750   AAATAGGCAACGATGCGTTAGGTGTTTCCAGCATATCATATTGAGTTTCAAAAGACAAGA  809

Query  935   ATTAGAATCATTTCAAGCAACACTACAGTTTTTTCTTTTAATC-AGAGTAATGCGAAAAG  993
             |  |||||||| |||||||||| | ||| |||||||||||| | | ||||||||||||||
Sbjct  810   AGCAGAATCATATCAAGCAACAATTCAGGTTTTTCTTTTAA-CTAAAGTAATGCGAAAAG  868

Query  994   CATTTTGGAGTTTCATCTATAAGATGATAGCCAACTACGAGTATGTGAAGG-GGG--G-A  1049
             ||||||||||||||||||||| | |||||||||| || |||||||| |||| |||  | |
Sbjct  869   CATTTTGGAGTTTCATCTATATGGTGATAGCCAATTATGAGTATGTAAAGGAGGGACGTA  928

Query  1050  -C-G-TTT-ATCTGTTAGCATGTAAGGCTTCCGATTGGAAAGCA  1089
              | | ||| |||||||||| ||||||||||||||| || |||||
Sbjct  929   ACAGATTTTATCTGTTAGCCTGTAAGGCTTCCGATCGGCAAGCA  972



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 53413379880


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5